Variant report

Variant	rs36029729
Chromosome Location	chr4:62822353-62822354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130149	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10138387	0.81[ASN][1000 genomes]
rs11625588	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11629188	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12101186	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12878750	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12889174	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12889498	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12889599	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12890464	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12895703	0.88[ASN][1000 genomes]
rs2396455	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2582515	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2582516	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2582519	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2582520	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2582521	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2841284	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28562928	0.81[ASN][1000 genomes]
rs2919620	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2919621	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3001409	0.90[ASN][1000 genomes]
rs4264330	0.83[ASN][1000 genomes]
rs4264331	0.83[ASN][1000 genomes]
rs66987285	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67906390	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8009473	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8010024	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62802000-62852000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:62804600-62845200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62816200-62823600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:62816400-62824000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:62816600-62823600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:62816600-62823600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:62816800-62825800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:62817200-62823800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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