Variant report

Variant	rs36032081
Chromosome Location	chr14:104363748-104363749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104321174..104323261-chr14:104360889..104363923,3	MCF-7	breast:
2	chr14:104311399..104315345-chr14:104362414..104366566,6	MCF-7	breast:
3	chr14:104363448..104365054-chr14:104402588..104404294,2	MCF-7	breast:
4	chr14:104351018..104353647-chr14:104363104..104364953,3	MCF-7	breast:
5	chr14:104272756..104274930-chr14:104362407..104364169,2	K562	blood:
6	chr14:104343466..104345327-chr14:104362441..104364606,2	K562	blood:

Variant related genes	Relation type
ENSG00000258735	Chromatin interaction
ENSG00000088808	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12895359	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12895592	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17101911	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1885072	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2236246	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236247	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2269186	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2273610	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2368984	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34982025	0.80[ASN][1000 genomes]
rs59776579	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145167	0.93[ASN][1000 genomes]
rs7145372	0.80[ASN][1000 genomes]
rs743212	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
8	nsv902321	chr14:104283104-104378087	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv1053305	chr14:104326137-104372608	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv542205	chr14:104326137-104372608	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv542206	chr14:104326137-104377507	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1042792	chr14:104326137-104384260	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv542207	chr14:104326137-104384260	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36032081	TDRD9	cis	Artery Tibial	GTEx

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104356800-104364000	Weak transcription	HMEC	breast
2	chr14:104362600-104365800	Enhancers	Fetal Intestine Small	intestine
3	chr14:104362600-104366000	Enhancers	Fetal Intestine Large	intestine
4	chr14:104362800-104364800	Enhancers	Right Ventricle	heart
5	chr14:104362800-104365400	Enhancers	Gastric	stomach
6	chr14:104362800-104366600	Enhancers	Esophagus	oesophagus
7	chr14:104363000-104363800	Flanking Active TSS	HepG2	liver
8	chr14:104363000-104364000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr14:104363200-104364000	Weak transcription	Brain Substantia Nigra	brain
10	chr14:104363200-104364000	Enhancers	Colonic Mucosa	Colon
11	chr14:104363200-104364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:104363200-104364200	Enhancers	Colon Smooth Muscle	Colon
13	chr14:104363200-104364200	Weak transcription	Small Intestine	intestine
14	chr14:104363200-104364200	Weak transcription	NHEK	skin
15	chr14:104363200-104365000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:104363200-104365200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr14:104363200-104365800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:104363200-104366000	Enhancers	Stomach Mucosa	stomach
19	chr14:104363200-104366200	Weak transcription	Spleen	Spleen
20	chr14:104363200-104366800	Weak transcription	Left Ventricle	heart
21	chr14:104363200-104367400	Weak transcription	Lung	lung
22	chr14:104363200-104376400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:104363200-104387000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:104363400-104363800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr14:104363400-104363800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:104363400-104364800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:104363400-104364800	Enhancers	Liver	Liver
28	chr14:104363400-104365400	Enhancers	Pancreas	Pancrea
29	chr14:104363400-104365800	Enhancers	Duodenum Mucosa	Duodenum
30	chr14:104363400-104366200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:104363600-104364000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr14:104363600-104364400	Enhancers	Rectal Smooth Muscle	rectum
33	chr14:104363600-104364400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
34	chr14:104363600-104375800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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