Variant report

Variant	rs36032963
Chromosome Location	chr2:145947417-145947418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12616031	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13007065	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13032601	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55949700	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67920867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145942600-145951800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:145942800-145951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:145943000-145951800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:145943200-145947800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:145944800-145947800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:145945400-145948400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:145946000-145947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:145946200-145949200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:145947200-145948200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:145947400-145948400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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