Variant report

Variant	rs36033107
Chromosome Location	chrX:64132811-64132812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10410114	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10410914	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10425763	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10426971	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11085508	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11667684	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12971688	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12975751	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12979885	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12980606	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1606063	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1849005	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1849007	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1912572	0.81[AMR][1000 genomes]
rs1985744	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2136888	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2158106	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2175367	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2214298	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2522097	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2666441	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2666451	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs403997	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs417947	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs424066	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4550595	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs699639	0.82[AMR][1000 genomes]
rs8105991	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756772	chrX:63509553-64136689	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv2758870	chrX:63509553-64136689	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv2830378	chrX:63523802-64234414	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64123200-64135200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chrX:64124000-64134400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chrX:64124000-64135000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chrX:64124800-64135400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chrX:64125400-64137400	Weak transcription	Primary B cells from peripheral blood	blood
6	chrX:64125600-64135200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chrX:64125600-64136800	Weak transcription	Ovary	ovary
8	chrX:64126200-64143200	Weak transcription	Primary hematopoietic stem cells	blood
9	chrX:64126600-64134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chrX:64126600-64136800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chrX:64126800-64134400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chrX:64126800-64136600	Weak transcription	Brain Hippocampus Middle	brain
13	chrX:64127000-64136400	Weak transcription	Fetal Intestine Large	intestine
14	chrX:64127000-64136400	Weak transcription	Spleen	Spleen
15	chrX:64127200-64136600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chrX:64127200-64143000	Weak transcription	Fetal Kidney	kidney
17	chrX:64127400-64135200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:64127600-64138400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chrX:64127600-64143000	Weak transcription	Right Ventricle	heart
20	chrX:64127800-64136800	Weak transcription	Lung	lung
21	chrX:64128000-64136800	Weak transcription	Brain Anterior Caudate	brain
22	chrX:64128400-64133800	Weak transcription	Dnd41	blood
23	chrX:64128800-64136200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chrX:64129200-64137400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chrX:64129600-64141600	Weak transcription	Fetal Lung	lung
26	chrX:64130400-64133400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chrX:64131000-64135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chrX:64131400-64137200	Weak transcription	Primary T cells from cord blood	blood
29	chrX:64131800-64135000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chrX:64132200-64155200	Weak transcription	Small Intestine	intestine
31	chrX:64132400-64143000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chrX:64132600-64136400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chrX:64132800-64136800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links