Variant report

Variant	rs36033488
Chromosome Location	chr1:152860594-152860595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152841405..152843459-chr1:152858865..152861299,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11205132	0.90[EUR][1000 genomes]
rs12239648	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12240158	0.96[EUR][1000 genomes]
rs12406539	0.85[EUR][1000 genomes]
rs12724858	1.00[AFR][1000 genomes]
rs12737395	1.00[AFR][1000 genomes]
rs12744709	1.00[AFR][1000 genomes]
rs12750261	1.00[AFR][1000 genomes]
rs12756264	1.00[AFR][1000 genomes]
rs12758478	1.00[AFR][1000 genomes]
rs17680493	1.00[AFR][1000 genomes]
rs1854779	0.90[EUR][1000 genomes]
rs2229496	0.90[EUR][1000 genomes]
rs28924725	1.00[AFR][1000 genomes]
rs34198967	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34336093	1.00[AFR][1000 genomes]
rs34593101	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34599045	0.90[EUR][1000 genomes]
rs34686286	1.00[AFR][1000 genomes]
rs34889136	1.00[AFR][1000 genomes]
rs34974823	1.00[AFR][1000 genomes]
rs35106590	1.00[AFR][1000 genomes]
rs35645842	1.00[AFR][1000 genomes]
rs35991466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3820136	0.85[EUR][1000 genomes]
rs3845340	0.85[EUR][1000 genomes]
rs4523473	0.90[EUR][1000 genomes]
rs4845327	0.90[EUR][1000 genomes]
rs6587711	0.85[EUR][1000 genomes]
rs71517761	1.00[AFR][1000 genomes]
rs71626737	1.00[AFR][1000 genomes]
rs71626738	1.00[AFR][1000 genomes]
rs71626739	1.00[AFR][1000 genomes]
rs71626740	1.00[AFR][1000 genomes]
rs71626743	1.00[AFR][1000 genomes]
rs71626744	1.00[AFR][1000 genomes]
rs71626747	1.00[AFR][1000 genomes]
rs7517189	0.90[EUR][1000 genomes]
rs7528862	0.90[EUR][1000 genomes]
rs7535306	0.85[EUR][1000 genomes]
rs7539232	0.89[EUR][1000 genomes]
rs7545413	0.85[EUR][1000 genomes]
rs7545520	0.85[EUR][1000 genomes]
rs913996	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv999918	chr1:152749733-152861866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv831592	chr1:152815054-152997162	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152855600-152861600	Enhancers	HMEC	breast
2	chr1:152856000-152861400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:152858800-152860800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:152858800-152861400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:152858800-152861400	Enhancers	NHEK	skin
6	chr1:152859000-152861200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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