Variant report

Variant	rs36034148
Chromosome Location	chr7:128061343-128061344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:128058762..128061562-chr7:128063088..128065048,2	K562	blood:
2	chr7:128048177..128050685-chr7:128059766..128063238,3	MCF-7	breast:
3	chr7:128055955..128059453-chr7:128060667..128062980,3	K562	blood:
4	chr7:128042298..128048334-chr7:128059762..128065417,7	K562	blood:
5	chr7:128056824..128058697-chr7:128060667..128062977,2	K562	blood:
6	chr7:127993560..127996179-chr7:128060265..128062601,2	K562	blood:
7	chr7:128060108..128063097-chr7:128063704..128066560,3	K562	blood:
8	chr7:128048374..128053724-chr7:128060919..128066147,7	K562	blood:
9	chr7:128045250..128046936-chr7:128059338..128061388,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106348	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12111601	0.89[AMR][1000 genomes]
rs34726078	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154423	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128050800-128062200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
3	chr7:128055800-128063800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:128056000-128062800	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:128059000-128063200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:128059400-128061800	Weak transcription	Fetal Brain Male	brain
7	chr7:128059800-128062400	Weak transcription	Fetal Brain Female	brain
8	chr7:128060200-128062200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:128060400-128061800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr7:128060400-128065000	Enhancers	Fetal Muscle Leg	muscle
11	chr7:128060600-128061800	Enhancers	Fetal Intestine Large	intestine
12	chr7:128060600-128061800	Enhancers	Placenta	Placenta
13	chr7:128060600-128061800	Enhancers	Ovary	ovary
14	chr7:128060600-128063600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr7:128060600-128064800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:128060800-128061400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:128060800-128061400	Enhancers	Fetal Intestine Small	intestine
18	chr7:128060800-128061800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:128060800-128061800	Enhancers	GM12878-XiMat	blood
20	chr7:128060800-128062200	Bivalent Enhancer	HepG2	liver
21	chr7:128060800-128062400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:128061000-128063800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:128061000-128064000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr7:128061000-128065200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr7:128061200-128061400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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