Variant report

Variant	rs36035670
Chromosome Location	chr12:39213092-39213093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10506129	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876086	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10876149	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10876163	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169301	0.95[AFR][1000 genomes]
rs11169387	0.87[ASN][1000 genomes]
rs11169508	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11169511	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11169547	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11169666	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11169769	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11169801	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169879	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11169908	0.82[EUR][1000 genomes]
rs11514111	0.80[ASN][1000 genomes]
rs11523607	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11609849	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11610376	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11612004	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11613205	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11615668	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12827647	0.85[EUR][1000 genomes]
rs1554550	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1601579	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17464772	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17523988	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1843639	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2056159	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2388060	0.85[EUR][1000 genomes]
rs34204495	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3886109	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4332556	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6580755	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7301104	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7960621	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7967776	0.81[EUR][1000 genomes]
rs7973992	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39201800-39216600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr12:39203200-39213400	Weak transcription	Pancreas	Pancrea
3	chr12:39203200-39220200	Weak transcription	Psoas Muscle	Psoas
4	chr12:39203200-39276000	Weak transcription	Aorta	Aorta
5	chr12:39203600-39216800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:39204000-39284800	Weak transcription	Lung	lung
7	chr12:39204200-39213400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:39204200-39216800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr12:39204800-39228800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:39204800-39231800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr12:39205000-39217000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:39205600-39223200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:39205600-39229400	Weak transcription	HMEC	breast
14	chr12:39206000-39216800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr12:39206400-39225800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:39206600-39213600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:39206600-39217400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:39206600-39220000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:39206600-39243800	Weak transcription	Left Ventricle	heart
20	chr12:39206600-39249200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr12:39206800-39213600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:39206800-39214400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr12:39206800-39215600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:39206800-39217000	Weak transcription	Adipose Nuclei	Adipose
25	chr12:39206800-39221400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr12:39206800-39226200	Weak transcription	GM12878-XiMat	blood
27	chr12:39206800-39241400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:39206800-39241400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:39207000-39218400	Weak transcription	Liver	Liver
30	chr12:39207200-39213600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:39209400-39215000	Weak transcription	Hela-S3	cervix

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