Variant report

Variant	rs36045725
Chromosome Location	chr4:78980065-78980066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78978883..78980863-chr4:79393127..79395107,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10461184	0.84[ASN][1000 genomes]
rs13129248	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28363906	0.85[ASN][1000 genomes]
rs28398889	0.87[ASN][1000 genomes]
rs28500721	0.87[ASN][1000 genomes]
rs34237418	0.89[EUR][1000 genomes]
rs4241622	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57455423	0.90[EUR][1000 genomes]
rs67045362	0.90[EUR][1000 genomes]
rs6820468	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6832285	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	nsv4396	chr4:78935347-78980705	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78977000-78980800	Active TSS	Left Ventricle	heart
2	chr4:78977000-78981200	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr4:78977200-78980800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr4:78977200-78980800	Active TSS	Psoas Muscle	Psoas
5	chr4:78977200-78981000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:78977200-78981000	Active TSS	Brain Angular Gyrus	brain
7	chr4:78977200-78981000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:78977200-78981000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:78977200-78981000	Active TSS	Right Ventricle	heart
10	chr4:78977200-78981000	Active TSS	A549	lung
11	chr4:78977200-78981200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:78977200-78981400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr4:78977400-78980200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr4:78977400-78980800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:78977400-78980800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:78977400-78980800	Active TSS	Aorta	Aorta
17	chr4:78977400-78980800	Active TSS	Fetal Heart	heart
18	chr4:78977400-78980800	Active TSS	Hela-S3	cervix
19	chr4:78977400-78981000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:78977400-78981000	Active TSS	HSMMtube	muscle
21	chr4:78977400-78981600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr4:78977400-78982000	Active TSS	H1 Cell Line	embryonic stem cell
23	chr4:78977600-78980200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
24	chr4:78977600-78980200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
25	chr4:78977600-78980600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
26	chr4:78977600-78980600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
27	chr4:78977600-78980600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
28	chr4:78977600-78980600	Active TSS	Gastric	stomach
29	chr4:78977600-78980600	Bivalent/Poised TSS	HepG2	liver
30	chr4:78977600-78980600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
31	chr4:78977600-78980800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:78977600-78980800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
33	chr4:78977600-78981000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:78977600-78981000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:78977600-78981000	Active TSS	Fetal Intestine Large	intestine
36	chr4:78977600-78981000	Active TSS	Fetal Intestine Small	intestine
37	chr4:78977600-78981200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:78977600-78981200	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr4:78977600-78981200	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr4:78977600-78981600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr4:78977600-78981800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:78977800-78980200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
43	chr4:78977800-78980200	Flanking Bivalent TSS/Enh	Liver	Liver
44	chr4:78977800-78980200	Bivalent/Poised TSS	Stomach Mucosa	stomach
45	chr4:78977800-78980600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
46	chr4:78977800-78980800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
47	chr4:78977800-78980800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
48	chr4:78977800-78980800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:78977800-78980800	Active TSS	Ovary	ovary
50	chr4:78977800-78981000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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