Variant report

Variant	rs36051940
Chromosome Location	chr7:97680542-97680543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11973371	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536528	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1636522	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17169258	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1799052	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1799053	0.85[EUR][1000 genomes]
rs1985592	0.85[EUR][1000 genomes]
rs35841683	0.95[EUR][1000 genomes]
rs3857802	0.85[EUR][1000 genomes]
rs705307	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777145	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7779795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847562	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847563	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs847564	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs847568	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847570	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847571	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1816676	chr7:97676259-97868033	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97678400-97680600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:97678400-97680600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:97678400-97680600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:97678800-97680600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:97679200-97680600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:97679200-97683600	Weak transcription	NHEK	skin
7	chr7:97680000-97680800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:97680400-97680600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:97680400-97680600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:97680400-97680600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
11	chr7:97680400-97680800	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:97680400-97680800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr7:97680400-97680800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:97680400-97680800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:97680400-97680800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr7:97680400-97680800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr7:97680400-97680800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:97680400-97680800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr7:97680400-97680800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
20	chr7:97680400-97680800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
21	chr7:97680400-97680800	Enhancers	Fetal Brain Male	brain
22	chr7:97680400-97680800	Enhancers	HMEC	breast
23	chr7:97680400-97681000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:97680400-97681000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:97680400-97681000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:97680400-97681000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:97680400-97681000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr7:97680400-97681000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:97680400-97681000	Active TSS	Brain Anterior Caudate	brain
30	chr7:97680400-97681000	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr7:97680400-97681000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:97680400-97681000	Flanking Active TSS	Fetal Brain Female	brain
33	chr7:97680400-97681000	Active TSS	Pancreatic Islets	Pancreatic Islet

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