Variant report

Variant	rs36052691
Chromosome Location	chr2:178386003-178386004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178374449..178377274-chr2:178385680..178388103,2	K562	blood:
2	chr2:178385225..178387645-chr2:178388374..178391242,2	K562	blood:
3	chr2:178249960..178250475-chr2:178385613..178386367,2	MCF-7	breast:
4	chr2:178385374..178386321-chr2:178399578..178400209,3	MCF-7	breast:
5	chr2:178385535..178386456-chr2:178399451..178400315,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16865305	1.00[AFR][1000 genomes]
rs7599337	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178296400-178397000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:178331400-178388400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr2:178331800-178389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:178332000-178392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:178332000-178393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:178335000-178410600	Weak transcription	Thymus	Thymus
7	chr2:178337600-178386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:178338000-178403000	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:178339800-178394400	Weak transcription	Hela-S3	cervix
10	chr2:178342400-178392000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:178342600-178391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:178343800-178391200	Weak transcription	HMEC	breast
13	chr2:178348400-178402600	Weak transcription	NHDF-Ad	bronchial
14	chr2:178349800-178407800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:178350000-178407000	Weak transcription	Osteobl	bone
16	chr2:178354600-178392000	Weak transcription	Brain Anterior Caudate	brain
17	chr2:178356000-178405400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:178358400-178390000	Weak transcription	Colonic Mucosa	Colon
19	chr2:178358600-178386800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:178358600-178388400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr2:178358600-178406000	Weak transcription	Ovary	ovary
22	chr2:178358600-178417000	Weak transcription	Aorta	Aorta
23	chr2:178358800-178388600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:178358800-178396600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr2:178360600-178405400	Weak transcription	NH-A	brain
26	chr2:178362400-178395600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:178363000-178395600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr2:178364400-178416600	Weak transcription	Esophagus	oesophagus
29	chr2:178367800-178397200	Weak transcription	Psoas Muscle	Psoas
30	chr2:178370200-178391200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:178371000-178388400	Weak transcription	Small Intestine	intestine
32	chr2:178371400-178399800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:178372600-178405400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr2:178372800-178399200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:178372800-178416600	Weak transcription	A549	lung
36	chr2:178374400-178394400	Strong transcription	HepG2	liver
37	chr2:178375200-178400800	Weak transcription	Lung	lung
38	chr2:178375400-178394400	Weak transcription	Fetal Muscle Leg	muscle
39	chr2:178375600-178413800	Weak transcription	K562	blood
40	chr2:178376000-178390600	Weak transcription	Fetal Brain Female	brain
41	chr2:178376000-178397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:178376200-178386400	Weak transcription	Primary T cells from cord blood	blood
43	chr2:178376200-178407800	Weak transcription	Left Ventricle	heart
44	chr2:178376200-178416600	Weak transcription	Pancreas	Pancrea
45	chr2:178376400-178386600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr2:178376600-178407600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr2:178378400-178410000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:178379400-178386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:178379600-178407600	Weak transcription	Fetal Kidney	kidney
50	chr2:178379800-178406000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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