Variant report

Variant	rs36052758
Chromosome Location	chr1:114310957-114310958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114310669..114312600-chr1:114322357..114324500,2	MCF-7	breast:
2	chr1:114301057..114304105-chr1:114310097..114314111,4	MCF-7	breast:
3	chr1:114310854..114312625-chr1:114314961..114316732,2	MCF-7	breast:
4	chr1:114307008..114312126-chr1:114352475..114355930,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231128	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000081019	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2358816	1.00[YRI][hapmap]
rs3789612	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv831093	chr1:114254167-114378235	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114302400-114311800	Weak transcription	Small Intestine	intestine
2	chr1:114302600-114318000	Weak transcription	Spleen	Spleen
3	chr1:114302600-114321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:114302800-114311800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:114302800-114312200	Weak transcription	Stomach Mucosa	stomach
6	chr1:114302800-114315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:114302800-114323200	Weak transcription	Aorta	Aorta
8	chr1:114302800-114323600	Weak transcription	Psoas Muscle	Psoas
9	chr1:114302800-114326000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:114302800-114326200	Weak transcription	Pancreas	Pancrea
11	chr1:114302800-114326200	Weak transcription	Right Ventricle	heart
12	chr1:114303000-114311200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:114303000-114315800	Weak transcription	Fetal Stomach	stomach
14	chr1:114303000-114318800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:114303000-114319000	Weak transcription	Fetal Brain Male	brain
16	chr1:114303000-114319000	Weak transcription	HSMMtube	muscle
17	chr1:114303000-114323200	Weak transcription	Fetal Heart	heart
18	chr1:114303000-114326200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:114303200-114311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:114303200-114311800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:114303200-114317200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:114303200-114328400	Weak transcription	A549	lung
23	chr1:114303400-114353800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:114304800-114320600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:114306000-114311000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:114306000-114311200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr1:114306000-114311400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr1:114306200-114311000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr1:114306200-114311200	Strong transcription	Placenta	Placenta
30	chr1:114306200-114311400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:114306200-114312600	Strong transcription	Dnd41	blood
32	chr1:114306400-114311000	Strong transcription	Fetal Kidney	kidney
33	chr1:114306400-114311000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr1:114307200-114311400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr1:114307200-114314000	Strong transcription	Primary B cells from cord blood	blood
36	chr1:114307400-114311000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:114307400-114311000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr1:114307400-114311000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:114307400-114311000	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:114307400-114311000	Strong transcription	Adipose Nuclei	Adipose
41	chr1:114307400-114311000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr1:114307400-114311200	Strong transcription	Liver	Liver
43	chr1:114307400-114311400	Strong transcription	HepG2	liver
44	chr1:114307400-114311800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:114307400-114312000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:114307400-114313000	Strong transcription	K562	blood
47	chr1:114307600-114311000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr1:114307600-114311000	Strong transcription	NHDF-Ad	bronchial
49	chr1:114307600-114311200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr1:114307600-114311400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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