Variant report

Variant	rs36063190
Chromosome Location	chr7:26348676-26348677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26340483..26343827-chr7:26348426..26350723,3	K562	blood:
2	chr7:26348261..26349909-chr7:26403707..26405412,2	MCF-7	breast:
3	chr7:26347459..26349895-chr7:26355478..26358331,2	MCF-7	breast:
4	chr7:26253560..26255433-chr7:26347806..26350350,2	K562	blood:
5	chr7:26237545..26240533-chr7:26348148..26350015,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12700724	1.00[AMR][1000 genomes]
rs12700725	1.00[AMR][1000 genomes]
rs13224478	1.00[AMR][1000 genomes]
rs13247860	1.00[AMR][1000 genomes]
rs2391268	1.00[AMR][1000 genomes]
rs34579559	1.00[AMR][1000 genomes]
rs34947105	1.00[AMR][1000 genomes]
rs35641831	1.00[AMR][1000 genomes]
rs35701416	1.00[AMR][1000 genomes]
rs35735803	1.00[AMR][1000 genomes]
rs35934277	1.00[AMR][1000 genomes]
rs71554052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26333600-26351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:26335000-26353000	Weak transcription	GM12878-XiMat	blood
3	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:26343200-26353000	Weak transcription	Spleen	Spleen
5	chr7:26343200-26355800	Weak transcription	Fetal Intestine Small	intestine
6	chr7:26344600-26351600	Enhancers	Placenta	Placenta
7	chr7:26345600-26386200	Weak transcription	Thymus	Thymus
8	chr7:26345800-26349400	Genic enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:26345800-26352400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:26345800-26375600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr7:26346000-26368200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr7:26346000-26373800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:26346200-26349000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:26346200-26349200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:26346200-26349400	Enhancers	K562	blood
16	chr7:26346600-26358200	Weak transcription	Liver	Liver
17	chr7:26346800-26360600	Weak transcription	Fetal Thymus	thymus
18	chr7:26347000-26349000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:26347000-26356600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:26347400-26349800	Strong transcription	Primary T cells from cord blood	blood
21	chr7:26347800-26350800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:26347800-26351600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:26347800-26354400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:26347800-26358600	Weak transcription	Adipose Nuclei	Adipose
25	chr7:26348000-26349000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:26348000-26349200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:26348000-26351400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:26348200-26349200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr7:26348200-26349800	Strong transcription	HepG2	liver
30	chr7:26348200-26351000	Weak transcription	Pancreas	Pancrea
31	chr7:26348200-26351200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr7:26348400-26350000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
33	chr7:26348400-26350000	Strong transcription	Primary B cells from cord blood	blood
34	chr7:26348400-26350200	Genic enhancers	Monocytes-CD14+_RO01746	blood
35	chr7:26348400-26351000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:26348600-26349000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:26348600-26350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr7:26348600-26351000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links