Variant report

Variant	rs36064566
Chromosome Location	chr7:100731184-100731185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:100729856-100732041	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:100730027-100733736	K562	blood:	n/a	n/a
3	POLR2A	chr7:100730951-100731259	GM12891	blood:	n/a	n/a
4	POLR2A	chr7:100730584-100731489	A549	lung:	n/a	n/a
5	POLR2A	chr7:100730371-100731931	GM12878	blood:	n/a	n/a
6	POLR2A	chr7:100729915-100731400	GM12892	blood:	n/a	n/a
7	POLR2A	chr7:100730986-100731496	GM12891	blood:	n/a	n/a
8	POLR2A	chr7:100729990-100733585	GM12892	blood:	n/a	n/a
9	POLR2A	chr7:100730888-100732451	GM12878	blood:	n/a	n/a
10	POLR2A	chr7:100731033-100731233	GM12878	blood:	n/a	n/a
11	POLR2A	chr7:100731147-100731516	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100730465..100732139-chr7:100784272..100786414,2	MCF-7	breast:
2	chr7:100730490..100732421-chr7:100773109..100775504,2	K562	blood:
3	chr7:100724040..100726394-chr7:100730905..100732742,2	MCF-7	breast:
4	chr7:100730924..100734717-chr7:100859526..100862672,3	MCF-7	breast:
5	chr7:100485325..100486982-chr7:100730736..100732316,2	K562	blood:

No data

Variant related genes	Relation type
TRIM56	TF binding region
ENSG00000106397	Chromatin interaction
ENSG00000087087	Chromatin interaction
ENSG00000106400	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10227169	1.00[ASN][1000 genomes]
rs6968731	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832517	chr7:100355490-100749246	Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2758125	chr7:100355490-100749246	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	esv2759547	chr7:100355490-100749246	Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	esv1826021	chr7:100525848-100749246	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1846644	chr7:100525848-100749246	Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv1822460	chr7:100606044-100749246	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv427796	chr7:100606044-100749246	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv428181	chr7:100606044-100749246	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv831074	chr7:100606051-100745532	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1033081	chr7:100669629-100771824	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
14	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
15	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100729400-100732200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:100729400-100734000	Weak transcription	Fetal Brain Female	brain
3	chr7:100729400-100736000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:100729400-100737800	Weak transcription	Small Intestine	intestine
5	chr7:100729400-100742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:100729400-100742600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:100729400-100742800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:100729400-100742800	Weak transcription	Brain Substantia Nigra	brain
9	chr7:100729600-100731800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:100729600-100732000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:100729600-100732600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:100729600-100734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:100729600-100735000	Weak transcription	Fetal Kidney	kidney
14	chr7:100729600-100736600	Weak transcription	NH-A	brain
15	chr7:100729600-100742800	Weak transcription	Brain Angular Gyrus	brain
16	chr7:100729800-100731200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr7:100729800-100731600	Genic enhancers	Colonic Mucosa	Colon
18	chr7:100729800-100733000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:100729800-100733400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:100729800-100734800	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr7:100730000-100731200	Transcr. at gene 5' and 3'	Lung	lung
22	chr7:100730000-100731600	Genic enhancers	Gastric	stomach
23	chr7:100730000-100731800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:100730000-100733200	Genic enhancers	Right Ventricle	heart
25	chr7:100730000-100733400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:100730000-100733400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:100730000-100733400	Strong transcription	Osteobl	bone
28	chr7:100730000-100733800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:100730200-100731200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr7:100730200-100731200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
31	chr7:100730200-100731400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
32	chr7:100730200-100731400	Genic enhancers	Fetal Muscle Leg	muscle
33	chr7:100730200-100731600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:100730200-100731600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:100730200-100732600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr7:100730200-100733000	Genic enhancers	Placenta	Placenta
37	chr7:100730200-100733200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:100730200-100733400	Genic enhancers	Spleen	Spleen
39	chr7:100730200-100733600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:100730200-100734600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:100730200-100734800	Strong transcription	Fetal Thymus	thymus
42	chr7:100730200-100735000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:100730200-100735200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr7:100730200-100735400	Strong transcription	Fetal Stomach	stomach
45	chr7:100730400-100731200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:100730400-100731600	Transcr. at gene 5' and 3'	Esophagus	oesophagus
47	chr7:100730400-100731800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:100730400-100731800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:100730400-100732200	Weak transcription	Right Atrium	heart
50	chr7:100730400-100732400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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