Variant report

Variant	rs36067643
Chromosome Location	chr8:99352685-99352686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99351310..99353495-chr8:99481497..99483902,2	MCF-7	breast:
2	chr8:99344628..99346433-chr8:99351762..99354586,2	K562	blood:
3	chr8:99178985..99181472-chr8:99351394..99354119,4	MCF-7	breast:
4	chr8:99318271..99319945-chr8:99351260..99353325,2	MCF-7	breast:
5	chr8:99302112..99311881-chr8:99336694..99356691,43	MCF-7	breast:
6	chr8:99249927..99252814-chr8:99350531..99353250,2	MCF-7	breast:
7	chr8:99304023..99311791-chr8:99340525..99354206,27	MCF-7	breast:
8	chr8:99351707..99353474-chr8:99355817..99358709,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10955166	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11782501	0.92[ASN][1000 genomes]
rs13259687	0.99[ASN][1000 genomes]
rs16892231	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35412869	0.86[ASN][1000 genomes]
rs4131950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4131951	0.98[ASN][1000 genomes]
rs4145238	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236847	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4273827	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4284021	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4320524	0.87[AMR][1000 genomes]
rs4346964	0.99[ASN][1000 genomes]
rs4346967	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4366057	0.94[ASN][1000 genomes]
rs4458848	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4644205	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734396	0.88[ASN][1000 genomes]
rs4734397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734398	0.97[ASN][1000 genomes]
rs4734399	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4735553	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735554	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56084201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468629	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468632	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7829174	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7831383	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv891217	chr8:99346537-99391285	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99344400-99354200	Enhancers	NHDF-Ad	bronchial
2	chr8:99348200-99354600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:99348600-99355200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:99350800-99352800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99351000-99352800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:99351000-99352800	Weak transcription	Osteobl	bone
7	chr8:99351000-99353000	Weak transcription	HSMM	muscle
8	chr8:99351000-99353000	Weak transcription	HSMMtube	muscle
9	chr8:99351200-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:99351400-99352800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:99351400-99352800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:99351600-99354600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:99351800-99352800	Weak transcription	NHLF	lung
14	chr8:99352000-99353200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:99352400-99355800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:99352600-99353800	Enhancers	HMEC	breast
17	chr8:99352600-99354800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links