Variant report

Variant	rs36070688
Chromosome Location	chr12:63160607-63160608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12814781	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4763195	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559157	chr12:63142592-63163019	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63140000-63168600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:63145800-63160800	Weak transcription	Brain Substantia Nigra	brain
3	chr12:63145800-63163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:63145800-63169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:63150000-63179800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63152400-63161200	Weak transcription	HUVEC	blood vessel
7	chr12:63153600-63163600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:63153600-63164000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:63153600-63171000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:63153800-63163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:63154000-63163000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:63155400-63161200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:63156000-63160800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr12:63156000-63161000	Weak transcription	Gastric	stomach
15	chr12:63156000-63168000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:63156200-63161600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:63156400-63163200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr12:63157200-63160800	Weak transcription	Aorta	Aorta
19	chr12:63157400-63165400	Weak transcription	Pancreas	Pancrea
20	chr12:63157600-63160800	Weak transcription	Adipose Nuclei	Adipose
21	chr12:63157600-63163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:63157800-63163200	Strong transcription	HepG2	liver
23	chr12:63157800-63163600	Weak transcription	Right Atrium	heart
24	chr12:63158000-63163600	Weak transcription	Ovary	ovary
25	chr12:63158000-63166000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:63158200-63163600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr12:63158200-63164000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr12:63158200-63167600	Weak transcription	Fetal Intestine Large	intestine
29	chr12:63158400-63160800	Weak transcription	Osteobl	bone
30	chr12:63158400-63162200	Strong transcription	Fetal Intestine Small	intestine
31	chr12:63158600-63166800	Weak transcription	Left Ventricle	heart
32	chr12:63158800-63161000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:63158800-63161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:63159000-63164400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr12:63159200-63160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:63159600-63160800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr12:63160000-63161800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr12:63160000-63162200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:63160000-63163600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:63160200-63160800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:63160200-63161800	Enhancers	Fetal Muscle Leg	muscle
42	chr12:63160200-63162000	Enhancers	HSMM	muscle
43	chr12:63160200-63166600	Enhancers	A549	lung
44	chr12:63160400-63161000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr12:63160400-63161600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:63160400-63162000	Enhancers	Fetal Thymus	thymus
47	chr12:63160400-63162000	Enhancers	NHDF-Ad	bronchial
48	chr12:63160400-63166600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:63160600-63160800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:63160600-63161000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links