Variant report

Variant	rs36073635
Chromosome Location	chr4:142409202-142409203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10519602	0.81[ASN][1000 genomes]
rs12501765	0.82[ASN][1000 genomes]
rs12506151	0.81[ASN][1000 genomes]
rs12507564	0.81[ASN][1000 genomes]
rs12507887	0.81[ASN][1000 genomes]
rs12508590	0.82[ASN][1000 genomes]
rs12509822	0.82[ASN][1000 genomes]
rs12510810	0.82[ASN][1000 genomes]
rs12511786	0.82[ASN][1000 genomes]
rs13105639	0.81[ASN][1000 genomes]
rs13117984	0.81[AFR][1000 genomes]
rs13129076	0.81[ASN][1000 genomes]
rs13130612	0.81[ASN][1000 genomes]
rs13131082	0.81[ASN][1000 genomes]
rs1436510	0.82[ASN][1000 genomes]
rs1521760	0.82[ASN][1000 genomes]
rs1521765	0.82[AFR][1000 genomes]
rs1554477	0.81[ASN][1000 genomes]
rs17007301	0.82[ASN][1000 genomes]
rs17354547	0.82[ASN][1000 genomes]
rs17354568	0.82[ASN][1000 genomes]
rs2090878	0.81[ASN][1000 genomes]
rs2103007	0.81[ASN][1000 genomes]
rs2103008	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2322181	0.81[ASN][1000 genomes]
rs34963107	0.81[ASN][1000 genomes]
rs35251884	0.82[ASN][1000 genomes]
rs35815487	0.82[ASN][1000 genomes]
rs36043837	0.82[ASN][1000 genomes]
rs4530710	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4956295	0.81[ASN][1000 genomes]
rs4956297	0.82[ASN][1000 genomes]
rs4956380	0.82[ASN][1000 genomes]
rs4956384	0.81[ASN][1000 genomes]
rs4956389	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55912825	0.81[ASN][1000 genomes]
rs56029027	0.81[ASN][1000 genomes]
rs56051122	0.82[ASN][1000 genomes]
rs56074428	0.81[ASN][1000 genomes]
rs56140725	0.81[ASN][1000 genomes]
rs56155233	0.82[ASN][1000 genomes]
rs60008610	0.82[ASN][1000 genomes]
rs62326572	0.82[ASN][1000 genomes]
rs6810477	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6816897	0.81[ASN][1000 genomes]
rs6818965	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6825913	0.82[ASN][1000 genomes]
rs6826356	0.81[AMR][1000 genomes]
rs6831141	0.82[ASN][1000 genomes]
rs6845550	0.81[ASN][1000 genomes]
rs7671408	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142408600-142410800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links