Variant report
Variant | rs36073795 |
---|---|
Chromosome Location | chr12:66566793-66566794 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10459263 | 0.93[EUR][1000 genomes] |
rs10506475 | 0.93[EUR][1000 genomes] |
rs10506479 | 0.93[EUR][1000 genomes] |
rs10878379 | 0.93[EUR][1000 genomes] |
rs10878380 | 0.93[EUR][1000 genomes] |
rs10878384 | 0.93[EUR][1000 genomes] |
rs10878387 | 0.93[EUR][1000 genomes] |
rs10878388 | 0.93[EUR][1000 genomes] |
rs11176040 | 0.92[EUR][1000 genomes] |
rs11176041 | 0.93[EUR][1000 genomes] |
rs11176042 | 0.93[EUR][1000 genomes] |
rs11176044 | 0.93[EUR][1000 genomes] |
rs11176046 | 0.93[EUR][1000 genomes] |
rs11176047 | 0.93[EUR][1000 genomes] |
rs11176048 | 0.93[EUR][1000 genomes] |
rs11176050 | 0.93[EUR][1000 genomes] |
rs11176051 | 0.93[EUR][1000 genomes] |
rs11176058 | 0.93[EUR][1000 genomes] |
rs11176059 | 0.93[EUR][1000 genomes] |
rs11176061 | 0.93[EUR][1000 genomes] |
rs11176062 | 0.93[EUR][1000 genomes] |
rs1168736 | 0.99[ASN][1000 genomes] |
rs1168739 | 0.99[ASN][1000 genomes] |
rs1168744 | 1.00[ASN][1000 genomes] |
rs1168757 | 0.83[ASN][1000 genomes] |
rs1168758 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1168772 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1179914 | 0.99[ASN][1000 genomes] |
rs12230221 | 0.93[EUR][1000 genomes] |
rs12230240 | 0.89[EUR][1000 genomes] |
rs12230800 | 0.93[EUR][1000 genomes] |
rs12306484 | 0.90[ASN][1000 genomes] |
rs12426813 | 0.83[EUR][1000 genomes] |
rs12578364 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12578752 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12578754 | 0.83[EUR][1000 genomes] |
rs12578801 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12578994 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12581033 | 0.93[EUR][1000 genomes] |
rs12581836 | 0.93[EUR][1000 genomes] |
rs12582384 | 0.93[EUR][1000 genomes] |
rs12814331 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12814606 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12821415 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs12822410 | 0.92[EUR][1000 genomes] |
rs12823414 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12823732 | 0.93[EUR][1000 genomes] |
rs12825992 | 0.93[EUR][1000 genomes] |
rs1370129 | 0.93[EUR][1000 genomes] |
rs1625441 | 0.82[ASN][1000 genomes] |
rs17245364 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1732893 | 0.90[ASN][1000 genomes] |
rs17825931 | 0.90[ASN][1000 genomes] |
rs17825943 | 0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1797410 | 0.97[ASN][1000 genomes] |
rs1921080 | 0.93[EUR][1000 genomes] |
rs1921082 | 0.95[ASN][1000 genomes] |
rs2576183 | 0.83[ASN][1000 genomes] |
rs2701644 | 0.90[ASN][1000 genomes] |
rs2701645 | 0.90[ASN][1000 genomes] |
rs2701653 | 0.82[ASN][1000 genomes] |
rs2701654 | 0.83[ASN][1000 genomes] |
rs2701655 | 0.84[ASN][1000 genomes] |
rs2870786 | 0.93[EUR][1000 genomes] |
rs2904498 | 0.93[EUR][1000 genomes] |
rs2917598 | 0.90[ASN][1000 genomes] |
rs34406211 | 0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34552143 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34750837 | 0.82[EUR][1000 genomes] |
rs35085853 | 0.80[EUR][1000 genomes] |
rs35131575 | 0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs35187440 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35447479 | 0.93[EUR][1000 genomes] |
rs35971570 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4281516 | 0.93[EUR][1000 genomes] |
rs59112451 | 0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs60102429 | 0.91[EUR][1000 genomes] |
rs66767092 | 0.93[EUR][1000 genomes] |
rs71450848 | 0.93[EUR][1000 genomes] |
rs73315943 | 0.83[EUR][1000 genomes] |
rs737614 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1052503 | chr12:66293898-67269495 | Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
2 | nsv541515 | chr12:66293898-67269495 | Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
3 | nsv1049537 | chr12:66403269-66606174 | Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
4 | nsv541516 | chr12:66547969-66596036 | Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
5 | nsv899215 | chr12:66556960-66594134 | Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 22 gene(s) | inside rSNPs | n/a |
6 | nsv899216 | chr12:66563835-66716844 | Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:66563800-66567200 | Weak transcription | Spleen | Spleen |
2 | chr12:66564400-66568000 | Enhancers | Primary monocytes fromperipheralblood | blood |
3 | chr12:66564400-66569200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
4 | chr12:66564400-66570000 | Weak transcription | Adipose Nuclei | Adipose |
5 | chr12:66566200-66567200 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
6 | chr12:66566600-66566800 | Flanking Active TSS | Primary neutrophils fromperipheralblood | blood |
7 | chr12:66566600-66567600 | Enhancers | Primary B cells from cord blood | blood |