Variant report

Variant	rs36077841
Chromosome Location	chr3:53739789-53739790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53734943..53737612-chr3:53737913..53740322,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13062035	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13086947	1.00[ASN][1000 genomes]
rs14165	1.00[ASN][1000 genomes]
rs17053338	0.91[AMR][1000 genomes]
rs34565662	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34723699	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36006337	1.00[ASN][1000 genomes]
rs4687586	1.00[ASN][1000 genomes]
rs4687587	1.00[ASN][1000 genomes]
rs62250900	1.00[ASN][1000 genomes]
rs62621128	0.91[AMR][1000 genomes]
rs6445606	1.00[ASN][1000 genomes]
rs71301847	0.91[AMR][1000 genomes]
rs71301848	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893362	1.00[ASN][1000 genomes]
rs920252	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:53721000-53739800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:53723200-53743400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:53726600-53744000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:53726800-53743400	Weak transcription	Spleen	Spleen
6	chr3:53735600-53740600	Strong transcription	Fetal Intestine Large	intestine
7	chr3:53736200-53740600	Enhancers	Fetal Thymus	thymus
8	chr3:53736800-53744000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:53737400-53739800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:53737400-53747800	Weak transcription	Fetal Brain Male	brain
11	chr3:53737800-53740000	Enhancers	Left Ventricle	heart
12	chr3:53737800-53740400	Enhancers	Right Atrium	heart
13	chr3:53738400-53741400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:53738600-53740000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:53738600-53740000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:53738600-53740400	Enhancers	Fetal Muscle Leg	muscle
17	chr3:53738800-53740000	Enhancers	Fetal Kidney	kidney
18	chr3:53738800-53744000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:53739000-53739800	Weak transcription	Fetal Heart	heart
20	chr3:53739000-53740200	Genic enhancers	Fetal Intestine Small	intestine
21	chr3:53739000-53740200	Enhancers	Fetal Stomach	stomach
22	chr3:53739000-53740600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:53739000-53740800	Enhancers	Primary hematopoietic stem cells	blood
24	chr3:53739000-53743400	Enhancers	Fetal Lung	lung
25	chr3:53739200-53740000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:53739200-53740000	Enhancers	Esophagus	oesophagus
27	chr3:53739200-53740000	Enhancers	Dnd41	blood
28	chr3:53739200-53740400	Enhancers	Pancreas	Pancrea
29	chr3:53739200-53740600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:53739200-53741600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:53739200-53742000	Weak transcription	Adipose Nuclei	Adipose
32	chr3:53739400-53740000	Weak transcription	Right Ventricle	heart
33	chr3:53739400-53742000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:53739600-53740000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr3:53739600-53740600	Enhancers	Brain Anterior Caudate	brain
36	chr3:53739600-53740800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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