Variant report

Variant	rs36078625
Chromosome Location	chr4:128947011-128947012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128945174..128947844-chr4:128948458..128951157,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11098945	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17315466	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2029411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534667	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap]
rs7697870	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv1019193	chr4:128810527-128949320	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv1019555	chr4:128901614-129088903	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36078625	LARP1B	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128887600-128981200	Weak transcription	Psoas Muscle	Psoas
2	chr4:128887800-128951200	Weak transcription	HUVEC	blood vessel
3	chr4:128888400-128956000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:128890200-128950600	Weak transcription	HepG2	liver
5	chr4:128890400-128958600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:128893600-128948200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:128893600-128954200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:128893600-128955800	Weak transcription	Right Ventricle	heart
9	chr4:128895800-128953600	Weak transcription	Pancreas	Pancrea
10	chr4:128896800-128951800	Weak transcription	HSMM	muscle
11	chr4:128912600-128950400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:128917400-128959000	Weak transcription	K562	blood
13	chr4:128918200-128954600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:128919200-128948200	Weak transcription	Fetal Heart	heart
15	chr4:128921800-128949600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:128922800-128949200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:128924800-128954400	Weak transcription	Fetal Brain Male	brain
18	chr4:128925000-128947800	Weak transcription	Stomach Mucosa	stomach
19	chr4:128926600-128954800	Weak transcription	Colonic Mucosa	Colon
20	chr4:128928000-128952000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:128931000-128947200	Weak transcription	NHLF	lung
22	chr4:128931000-128953200	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:128933000-128954800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:128934000-128954600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:128934200-128952800	Weak transcription	Gastric	stomach
26	chr4:128934400-128952000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:128934400-128963000	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:128935000-128950800	Weak transcription	Hela-S3	cervix
29	chr4:128935200-128956000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:128935600-128962400	Weak transcription	HMEC	breast
31	chr4:128936400-128952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:128938000-128947200	Strong transcription	Fetal Intestine Large	intestine
33	chr4:128938000-128947400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:128938000-128954200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr4:128938200-128950600	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr4:128938200-128953400	Strong transcription	Fetal Thymus	thymus
37	chr4:128938400-128947200	Strong transcription	Dnd41	blood
38	chr4:128938400-128951400	Strong transcription	Liver	Liver
39	chr4:128938400-128952200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:128938400-128953600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:128938600-128947200	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr4:128938800-128962000	Weak transcription	NH-A	brain
43	chr4:128939000-128947200	Strong transcription	Primary B cells from cord blood	blood
44	chr4:128939000-128947200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:128939000-128947200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:128939000-128953600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr4:128939200-128951400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr4:128939400-128947200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:128940000-128959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:128941200-128951200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links