Variant report

Variant	rs36088595
Chromosome Location	chr6:33983941-33983942
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2395552	1.00[EUR][1000 genomes]
rs34858760	1.00[EUR][1000 genomes]
rs73747204	1.00[EUR][1000 genomes]
rs73747250	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv885777	chr6:33942228-33997375	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33982400-33984000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:33982400-33984400	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr6:33982600-33984000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:33982600-33984000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:33982600-33984400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:33982800-33984000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr6:33982800-33984200	Enhancers	Fetal Brain Female	brain
8	chr6:33983000-33984000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr6:33983000-33984000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:33983000-33984200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:33983000-33984200	Enhancers	Brain Germinal Matrix	brain
12	chr6:33983200-33984000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr6:33983200-33984000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:33983200-33984000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr6:33983200-33984000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr6:33983200-33984400	Enhancers	Fetal Brain Male	brain
17	chr6:33983400-33984000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr6:33983600-33984000	Enhancers	Brain Anterior Caudate	brain
19	chr6:33983800-33984000	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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