Variant report

Variant	rs36091286
Chromosome Location	chr21:46134897-46134898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:46126774..46129621-chr21:46133926..46136280,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12329668	1.00[ASN][1000 genomes]
rs17211921	1.00[ASN][1000 genomes]
rs17213734	1.00[ASN][1000 genomes]
rs17213972	1.00[ASN][1000 genomes]
rs17284014	1.00[ASN][1000 genomes]
rs17284056	1.00[ASN][1000 genomes]
rs17284167	1.00[ASN][1000 genomes]
rs17285096	1.00[ASN][1000 genomes]
rs17285396	1.00[ASN][1000 genomes]
rs17285466	1.00[ASN][1000 genomes]
rs17285795	1.00[ASN][1000 genomes]
rs2329891	1.00[ASN][1000 genomes]
rs2329896	1.00[ASN][1000 genomes]
rs2838628	1.00[ASN][1000 genomes]
rs28658387	1.00[ASN][1000 genomes]
rs4401291	1.00[ASN][1000 genomes]
rs55700391	1.00[ASN][1000 genomes]
rs55781313	1.00[ASN][1000 genomes]
rs55805293	1.00[ASN][1000 genomes]
rs55830574	1.00[ASN][1000 genomes]
rs55929251	1.00[ASN][1000 genomes]
rs55962178	1.00[ASN][1000 genomes]
rs56008135	1.00[ASN][1000 genomes]
rs56019874	1.00[ASN][1000 genomes]
rs56135164	1.00[ASN][1000 genomes]
rs56138130	1.00[ASN][1000 genomes]
rs56277017	1.00[ASN][1000 genomes]
rs56310126	1.00[ASN][1000 genomes]
rs59742230	1.00[ASN][1000 genomes]
rs60533424	1.00[ASN][1000 genomes]
rs73233077	1.00[ASN][1000 genomes]
rs73233084	1.00[ASN][1000 genomes]
rs73233088	1.00[ASN][1000 genomes]
rs73233095	1.00[ASN][1000 genomes]
rs73233102	1.00[ASN][1000 genomes]
rs73234804	1.00[ASN][1000 genomes]
rs73234823	1.00[ASN][1000 genomes]
rs73234825	1.00[ASN][1000 genomes]
rs73234826	1.00[ASN][1000 genomes]
rs73234827	1.00[ASN][1000 genomes]
rs73234828	1.00[ASN][1000 genomes]
rs73234830	1.00[ASN][1000 genomes]
rs73234831	1.00[ASN][1000 genomes]
rs73234832	1.00[ASN][1000 genomes]
rs73234833	1.00[ASN][1000 genomes]
rs73234834	1.00[ASN][1000 genomes]
rs73234835	1.00[ASN][1000 genomes]
rs73234839	1.00[ASN][1000 genomes]
rs73234841	1.00[ASN][1000 genomes]
rs73234848	1.00[ASN][1000 genomes]
rs73234850	1.00[ASN][1000 genomes]
rs73234853	1.00[ASN][1000 genomes]
rs73234870	1.00[ASN][1000 genomes]
rs875125	1.00[ASN][1000 genomes]
rs9978068	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv913956	chr21:46096964-46279505	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1062245	chr21:46096964-46332587	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv544478	chr21:46096964-46332587	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46132600-46135400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr21:46133600-46135200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:46134400-46135000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr21:46134400-46135200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr21:46134600-46135000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr21:46134600-46135200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr21:46134600-46135200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr21:46134600-46135200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr21:46134600-46135200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr21:46134800-46135000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr21:46134800-46135000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
12	chr21:46134800-46135000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
13	chr21:46134800-46135000	Bivalent Enhancer	Fetal Thymus	thymus
14	chr21:46134800-46135200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr21:46134800-46135200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr21:46134800-46135200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr21:46134800-46135600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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