Variant report

Variant	rs360918
Chromosome Location	chr4:152834396-152834397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10017160	0.93[EUR][1000 genomes]
rs165578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2020009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs360922	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360936	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs361136	0.94[EUR][1000 genomes]
rs361156	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs361157	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs499797	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs519327	0.94[EUR][1000 genomes]
rs522743	0.92[EUR][1000 genomes]
rs530315	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs551305	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs569802	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152831600-152838400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:152833000-152834800	Enhancers	Thymus	Thymus
3	chr4:152833600-152834400	Flanking Active TSS	Fetal Thymus	thymus
4	chr4:152833600-152838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:152834000-152838800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:152834200-152838400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:152834200-152838600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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