Variant report

Variant	rs36092047
Chromosome Location	chr6:37136100-37136101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:37135827-37146353	K562	blood:	n/a	n/a
2	RCOR1	chr6:37135921-37136234	K562	blood:	n/a	n/a
3	SMC3	chr6:37135928-37140659	SK-N-SH	brain:	n/a	chr6:37140122-37140136 chr6:37139751-37139758 chr6:37137226-37137236 chr6:37140122-37140132
4	POLR2A	chr6:37135879-37139633	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:37136098-37140728	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:37127696..37130193-chr6:37133679..37136120,2	K562	blood:
2	chr6:37058109..37060738-chr6:37135509..37137809,2	MCF-7	breast:
3	chr6:37105482..37108115-chr6:37135439..37137000,2	K562	blood:
4	chr6:37121872..37123647-chr6:37135726..37137977,2	MCF-7	breast:

Variant related genes	Relation type
PIM1	TF binding region
ENSG00000216412	Chromatin interaction

rs_ID	r²[population]
rs35867476	1.00[EUR][1000 genomes]
rs3897278	1.00[EUR][1000 genomes]
rs61241984	1.00[EUR][1000 genomes]
rs72552389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417847	1.00[EUR][1000 genomes]
rs7744645	1.00[EUR][1000 genomes]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37110400-37136800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37118000-37136600	Weak transcription	Right Atrium	heart
3	chr6:37123600-37137000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:37129000-37137200	Weak transcription	Small Intestine	intestine
5	chr6:37129200-37136600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:37129400-37136600	Weak transcription	Liver	Liver
7	chr6:37132800-37136200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:37132800-37136600	Weak transcription	Colonic Mucosa	Colon
9	chr6:37132800-37136600	Weak transcription	GM12878-XiMat	blood
10	chr6:37133000-37136600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:37133400-37136600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:37133400-37136800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:37134000-37136600	Enhancers	HepG2	liver
14	chr6:37134200-37136400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:37135800-37136200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:37135800-37136200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:37135800-37136200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:37135800-37136400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:37135800-37136400	Enhancers	Adipose Nuclei	Adipose
20	chr6:37135800-37136400	Enhancers	Fetal Brain Female	brain
21	chr6:37135800-37136600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:37135800-37136600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:37135800-37136600	Enhancers	Fetal Stomach	stomach
24	chr6:37135800-37137400	Enhancers	Fetal Heart	heart
25	chr6:37136000-37136200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:37136000-37136200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr6:37136000-37136200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr6:37136000-37136200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:37136000-37136200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:37136000-37136200	Enhancers	Ovary	ovary
31	chr6:37136000-37136200	Enhancers	Right Ventricle	heart
32	chr6:37136000-37136400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:37136000-37136400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:37136000-37136400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:37136000-37136400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:37136000-37136400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:37136000-37136400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:37136000-37136400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:37136000-37136400	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr6:37136000-37136600	Enhancers	H1 Cell Line	embryonic stem cell
41	chr6:37136000-37136600	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:37136000-37136600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:37136000-37136600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:37136000-37136600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:37136000-37136600	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:37136000-37136600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:37136000-37136600	Enhancers	Duodenum Mucosa	Duodenum
48	chr6:37136000-37136600	Enhancers	Fetal Brain Male	brain
49	chr6:37136000-37136600	Enhancers	Fetal Intestine Small	intestine
50	chr6:37136000-37136600	Enhancers	Fetal Kidney	kidney

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