Variant report

Variant	rs36092717
Chromosome Location	chr12:56039149-56039150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:56036645..56039523-chr12:56113243..56115261,2	MCF-7	breast:
2	chr12:56037529..56040108-chr12:56117252..56119317,2	K562	blood:
3	chr12:55552029..55554252-chr12:56038940..56041614,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135437	Chromatin interaction
ENSG00000224622	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35531998	1.00[AMR][1000 genomes]
rs35766549	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35869745	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56032800-56040000	Weak transcription	Right Atrium	heart
2	chr12:56033800-56041400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:56035400-56040200	Weak transcription	Gastric	stomach
4	chr12:56035600-56040200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:56036800-56039200	Weak transcription	Primary T cells from cord blood	blood
6	chr12:56036800-56039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:56036800-56039400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:56036800-56039800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:56036800-56039800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:56036800-56039800	Weak transcription	Fetal Thymus	thymus
11	chr12:56037000-56039200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:56037000-56039400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:56037000-56039600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr12:56037000-56039800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:56037000-56039800	Weak transcription	Adipose Nuclei	Adipose
16	chr12:56037000-56040000	Weak transcription	Placenta	Placenta
17	chr12:56037200-56040000	Weak transcription	Brain Hippocampus Middle	brain
18	chr12:56037200-56040200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr12:56037400-56039200	Weak transcription	GM12878-XiMat	blood
20	chr12:56037400-56039400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr12:56037400-56039800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr12:56037400-56039800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:56037400-56039800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr12:56037400-56040000	Weak transcription	Spleen	Spleen
25	chr12:56037400-56040200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:56037600-56039400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr12:56037600-56039800	Enhancers	Primary B cells from cord blood	blood
28	chr12:56038600-56039200	Enhancers	Primary neutrophils fromperipheralblood	blood

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