Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF3	chr3:34242053-34242463	GM12878	blood:	n/a	n/a
2	EP300	chr3:34242174-34242371	GM12878	blood:	n/a	n/a
3	MXI1	chr3:34242173-34242623	GM12878	blood:	n/a	n/a
4	TBL1XR1	chr3:34242152-34242459	GM12878	blood:	n/a	n/a
5	PAX5	chr3:34242120-34242458	GM12878	blood:	n/a	n/a
6	CUX1	chr3:34242221-34242408	GM12878	blood:	n/a	n/a
7	PAX5	chr3:34241969-34242557	GM12878	blood:	n/a	n/a
8	PAX5	chr3:34242142-34242407	GM12891	blood:	n/a	n/a
9	RUNX3	chr3:34242051-34242721	GM12878	blood:	n/a	chr3:34242540-34242549 chr3:34242540-34242549
10	MAZ	chr3:34242221-34242409	GM12878	blood:	n/a	n/a
11	BHLHE40	chr3:34242129-34242387	GM12878	blood:	n/a	n/a
12	MTA3	chr3:34241998-34242592	GM12878	blood:	n/a	n/a
13	TCF3	chr3:34242143-34242357	GM12878	blood:	n/a	n/a
14	NFIC	chr3:34241995-34242796	GM12878	blood:	n/a	n/a
15	RUNX3	chr3:34242076-34242673	GM12878	blood:	n/a	chr3:34242540-34242549 chr3:34242540-34242549
16	TCF12	chr3:34242078-34242354	GM12878	blood:	n/a	chr3:34242223-34242230
17	SMC3	chr3:34242218-34242379	GM12878	blood:	n/a	n/a
18	IRF3	chr3:34242215-34242343	GM12878	blood:	n/a	n/a
19	EP300	chr3:34242046-34242473	GM12878	blood:	n/a	n/a
20	BATF	chr3:34242122-34242396	GM12878	blood:	n/a	n/a
21	TCF12	chr3:34242135-34242372	GM12878	blood:	n/a	chr3:34242223-34242230
22	STAT3	chr3:34242218-34242384	GM12878	blood:	n/a	n/a
23	ATF2	chr3:34241982-34242432	GM12878	blood:	n/a	n/a
24	RCOR1	chr3:34242103-34242367	GM12878	blood:	n/a	n/a
25	PAX5	chr3:34242114-34242396	GM12878	blood:	n/a	n/a
26	BCLAF1	chr3:34241952-34242458	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34105862..34107737-chr3:34241942..34244433,2	K562	blood:

Variant related genes	Relation type
ENSG00000236452	TF binding region

rSNPs within LD-proxies of this variant (count:7)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34238000-34242400	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:34239000-34242400	Enhancers	Primary B cells from cord blood	blood
3	chr3:34240200-34242400	Weak transcription	Thymus	Thymus
4	chr3:34241600-34242400	Flanking Active TSS	Dnd41	blood
5	chr3:34241800-34243000	Enhancers	Fetal Thymus	thymus
6	chr3:34241800-34243200	Enhancers	HUVEC	blood vessel
7	chr3:34242200-34242400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:34242200-34242400	Enhancers	GM12878-XiMat	blood

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