Variant report

Variant	rs36097900
Chromosome Location	chr9:8597536-8597537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11787728	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788419	0.95[ASN][1000 genomes]
rs11788439	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11792966	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12682768	0.81[ASN][1000 genomes]
rs1999850	0.92[ASN][1000 genomes]
rs34351846	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34455709	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56049113	0.88[ASN][1000 genomes]
rs7020239	0.90[ASN][1000 genomes]
rs7035431	0.90[ASN][1000 genomes]
rs9792470	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv613291	chr9:8573166-8615045	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8576600-8613200	Weak transcription	Fetal Brain Female	brain
2	chr9:8578800-8600000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:8583600-8605600	Weak transcription	Fetal Lung	lung
4	chr9:8583600-8613600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:8586000-8618000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:8588200-8613600	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:8594000-8600000	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:8597200-8615000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links