Variant report

Variant	rs36098544
Chromosome Location	chr7:86580674-86580675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86572821..86576737-chr7:86578904..86581669,3	K562	blood:
2	chr7:86579163..86580721-chr7:86780736..86782785,2	MCF-7	breast:
3	chr7:86578487..86581845-chr7:86586370..86588762,3	K562	blood:
4	chr19:13261771..13264405-chr7:86579886..86582826,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224046	Chromatin interaction
ENSG00000160888	Chromatin interaction
ENSG00000135164	Chromatin interaction
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11980329	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12704294	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12704296	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12704297	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55979904	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67263053	0.85[EUR][1000 genomes]
rs7781002	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7788115	0.84[EUR][1000 genomes]
rs7797095	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86569200-86581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:86573600-86582600	Weak transcription	Gastric	stomach
3	chr7:86576800-86581200	Weak transcription	Fetal Stomach	stomach
4	chr7:86577800-86582600	Weak transcription	HepG2	liver
5	chr7:86577800-86583000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:86578000-86581600	Weak transcription	Hela-S3	cervix
7	chr7:86578000-86585600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:86579000-86585400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:86579200-86582200	Weak transcription	Pancreas	Pancrea
10	chr7:86579200-86585600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:86579200-86585800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:86579200-86594400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:86579400-86592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:86579600-86588600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:86579800-86580800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:86580000-86582600	Weak transcription	Brain Anterior Caudate	brain
17	chr7:86580200-86582400	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:86580200-86582600	Weak transcription	Brain Angular Gyrus	brain
19	chr7:86580200-86582600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:86580200-86592800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:86580200-86596000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:86580400-86582600	Weak transcription	Brain Substantia Nigra	brain
23	chr7:86580400-86583200	Weak transcription	GM12878-XiMat	blood
24	chr7:86580600-86585600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links