Variant report

Variant	rs36105944
Chromosome Location	chr7:65715934-65715935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65715220..65718095-chr7:65721479..65725150,3	MCF-7	breast:
2	chr7:65715302..65717280-chr7:65718267..65720780,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13236344	1.00[AFR][1000 genomes]
rs35751092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35791421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792434	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65672200-65723400	Weak transcription	Right Atrium	heart
2	chr7:65676000-65716800	Weak transcription	Primary B cells from cord blood	blood
3	chr7:65701600-65729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:65702400-65723600	Weak transcription	Gastric	stomach
5	chr7:65703800-65716600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:65704000-65726800	Weak transcription	HSMM	muscle
7	chr7:65704200-65729200	Weak transcription	Aorta	Aorta
8	chr7:65704200-65731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:65704400-65720200	Weak transcription	HSMMtube	muscle
10	chr7:65704400-65721800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:65704400-65746800	Weak transcription	Pancreas	Pancrea
12	chr7:65704600-65716200	Weak transcription	Fetal Intestine Large	intestine
13	chr7:65704800-65720200	Weak transcription	NHLF	lung
14	chr7:65705800-65716400	Weak transcription	Esophagus	oesophagus
15	chr7:65705800-65729200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:65706000-65716800	Weak transcription	Fetal Stomach	stomach
17	chr7:65706000-65720200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:65706200-65720200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:65706400-65720200	Weak transcription	NHDF-Ad	bronchial
20	chr7:65707000-65721200	Weak transcription	Fetal Kidney	kidney
21	chr7:65708400-65718200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:65709800-65723400	Weak transcription	Ovary	ovary
23	chr7:65710600-65720200	Weak transcription	Brain Angular Gyrus	brain
24	chr7:65711800-65720400	Weak transcription	Fetal Lung	lung
25	chr7:65711800-65723200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:65711800-65723200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:65712800-65721800	Weak transcription	Left Ventricle	heart
28	chr7:65712800-65729200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:65713800-65716600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:65714400-65716800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr7:65714400-65716800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:65714600-65716800	Enhancers	HMEC	breast
33	chr7:65714600-65720600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:65715200-65716800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:65715200-65716800	Enhancers	NHEK	skin
36	chr7:65715200-65721200	Weak transcription	Liver	Liver
37	chr7:65715200-65723200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:65715400-65716000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:65715400-65716600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr7:65715400-65716600	Enhancers	A549	lung
41	chr7:65715400-65716600	Enhancers	NH-A	brain
42	chr7:65715400-65716600	Enhancers	Osteobl	bone
43	chr7:65715400-65716800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:65715400-65716800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:65715400-65716800	Enhancers	Hela-S3	cervix
46	chr7:65715400-65716800	Enhancers	HepG2	liver
47	chr7:65715600-65716000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:65715600-65716800	Enhancers	HUVEC	blood vessel
49	chr7:65715600-65722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:65715800-65716000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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