Variant report

Variant	rs36113166
Chromosome Location	chr14:24622679-24622680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24621701-24625095	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24622406-24622685	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
RNF31	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10467733	0.83[EUR][1000 genomes]
rs12432304	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295977	0.82[EUR][1000 genomes]
rs2295978	0.82[EUR][1000 genomes]
rs28495052	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59110805	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7146310	0.81[EUR][1000 genomes]
rs7154911	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv869985	chr14:24578013-24652669	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24617600-24630400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24617800-24626800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:24617800-24629800	Weak transcription	Right Atrium	heart
4	chr14:24618000-24622800	Strong transcription	Rectal Smooth Muscle	rectum
5	chr14:24618000-24626000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:24618000-24627400	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr14:24618000-24629000	Strong transcription	Placenta	Placenta
8	chr14:24618000-24629400	Strong transcription	Fetal Intestine Small	intestine
9	chr14:24618000-24630000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:24618000-24630200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:24618000-24630400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:24618200-24622800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:24618200-24622800	Strong transcription	Fetal Lung	lung
14	chr14:24618200-24629000	Strong transcription	Fetal Thymus	thymus
15	chr14:24618200-24629400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr14:24618200-24629400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:24618200-24629400	Strong transcription	Fetal Intestine Large	intestine
18	chr14:24618200-24629600	Weak transcription	Fetal Heart	heart
19	chr14:24618200-24630000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:24618200-24630000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:24618400-24622800	Strong transcription	NH-A	brain
22	chr14:24618400-24627800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:24618400-24629600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:24618400-24629800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:24618400-24629800	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr14:24618400-24630000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:24618600-24622800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:24618600-24622800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:24618600-24622800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:24618600-24624800	Strong transcription	Fetal Muscle Leg	muscle
31	chr14:24618600-24628000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:24618600-24628000	Strong transcription	Ovary	ovary
33	chr14:24618600-24629800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:24618600-24629800	Strong transcription	Adipose Nuclei	Adipose
35	chr14:24618600-24630200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:24618600-24630200	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:24618800-24622800	Strong transcription	Fetal Kidney	kidney
38	chr14:24618800-24622800	Strong transcription	Left Ventricle	heart
39	chr14:24618800-24627600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:24618800-24627800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:24618800-24627800	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr14:24618800-24628000	Strong transcription	Right Ventricle	heart
43	chr14:24618800-24629200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:24618800-24630000	Strong transcription	Fetal Stomach	stomach
45	chr14:24618800-24630000	Strong transcription	Thymus	Thymus
46	chr14:24619000-24622800	Strong transcription	Primary T cells from cord blood	blood
47	chr14:24619000-24623800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr14:24619000-24629200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr14:24619200-24623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:24619200-24629400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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