Variant report

Variant	rs36114837
Chromosome Location	chr3:46505315-46505316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46495712..46498114-chr3:46504861..46507290,2	K562	blood:

Variant related genes	Relation type
ENSG00000012223	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13064957	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13070740	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34003820	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34445409	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34827868	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34904359	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34927844	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35088929	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4547741	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5015750	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71327065	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71327066	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7633268	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46503800-46506800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:46504000-46506800	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr3:46504000-46506800	Enhancers	Lung	lung
4	chr3:46504200-46505400	Enhancers	HUVEC	blood vessel
5	chr3:46504200-46506800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr3:46504400-46505400	Weak transcription	Gastric	stomach
7	chr3:46504600-46505400	Bivalent Enhancer	Placenta	Placenta
8	chr3:46504600-46506600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr3:46504800-46505800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
10	chr3:46504800-46505800	Enhancers	Pancreas	Pancrea
11	chr3:46504800-46506000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
12	chr3:46504800-46506200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:46504800-46507000	Enhancers	Right Ventricle	heart
14	chr3:46504800-46509000	Enhancers	Spleen	Spleen
15	chr3:46505000-46506000	Weak transcription	Right Atrium	heart
16	chr3:46505000-46506600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
17	chr3:46505000-46507400	Weak transcription	Psoas Muscle	Psoas
18	chr3:46505200-46505400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr3:46505200-46505400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
20	chr3:46505200-46505400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr3:46505200-46505600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
22	chr3:46505200-46506000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:46505200-46506800	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links