Variant report

Variant	rs36116159
Chromosome Location	chr6:132910145-132910146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11961961	1.00[EUR][1000 genomes]
rs17061372	1.00[EUR][1000 genomes]
rs61741985	1.00[EUR][1000 genomes]
rs6901223	0.83[AMR][1000 genomes]
rs7759180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8192626	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132905400-132910400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:132907000-132914800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:132908000-132910800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:132908000-132911200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:132909800-132910200	Enhancers	Pancreas	Pancrea
6	chr6:132910000-132910200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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