Variant report

Variant	rs36117845
Chromosome Location	chr8:125794348-125794349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125791704..125794357-chr8:125812498..125814559,2	K562	blood:
2	chr8:125793830..125795727-chr8:125800915..125802469,3	MCF-7	breast:
3	chr8:125794218..125796847-chr8:126009129..126011511,2	MCF-7	breast:
4	chr8:125792514..125796843-chr8:125864654..125871785,11	MCF-7	breast:
5	chr6:26123606..26125490-chr8:125793266..125795551,2	MCF-7	breast:
6	chr8:125793631..125795997-chr8:125865108..125867382,3	MCF-7	breast:
7	chr8:125764175..125766325-chr8:125793674..125795274,2	MCF-7	breast:
8	chr8:125792724..125795528-chr8:125796094..125800609,5	MCF-7	breast:
9	chr8:125775270..125777039-chr8:125793378..125795763,2	MCF-7	breast:
10	chr8:125793171..125795033-chr8:125797268..125799182,2	K562	blood:
11	chr8:125793781..125797282-chr8:125825921..125829127,4	K562	blood:
12	chr8:125784252..125789525-chr8:125791354..125795581,7	MCF-7	breast:
13	chr8:125792118..125796682-chr8:125867433..125871001,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000104549	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000255491	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10096762	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10096773	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10109504	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10111362	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10441517	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956210	0.94[ASN][1000 genomes]
rs10956211	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956212	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956213	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34102348	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34642461	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35401131	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35468637	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35806510	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4871545	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871548	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60194127	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62530567	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62530568	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470281	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470283	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470285	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66919556	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6987769	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6998379	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7000790	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7465312	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7465366	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7821674	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822172	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822246	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822339	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823921	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824418	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7840165	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7840339	0.96[ASN][1000 genomes]
rs7840519	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7840542	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297697	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297698	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9643204	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125774200-125795800	Weak transcription	Pancreas	Pancrea
2	chr8:125785000-125794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:125788800-125795000	Weak transcription	Spleen	Spleen
4	chr8:125788800-125796800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:125788800-125797000	Weak transcription	Left Ventricle	heart
6	chr8:125791200-125795800	Enhancers	Placenta	Placenta
7	chr8:125792000-125797800	Enhancers	HepG2	liver
8	chr8:125792800-125794400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:125793200-125794400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:125793200-125794400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr8:125793200-125794400	Enhancers	NHEK	skin
12	chr8:125793200-125794600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:125793200-125794800	Enhancers	HMEC	breast
14	chr8:125793200-125795000	Enhancers	Fetal Intestine Small	intestine
15	chr8:125793200-125795800	Enhancers	K562	blood
16	chr8:125793400-125795000	Enhancers	Fetal Intestine Large	intestine
17	chr8:125793400-125796400	Enhancers	Primary B cells from peripheral blood	blood
18	chr8:125793400-125797000	Weak transcription	Esophagus	oesophagus
19	chr8:125793600-125797800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr8:125794000-125796000	Enhancers	Primary B cells from cord blood	blood
21	chr8:125794000-125798800	Enhancers	Primary monocytes fromperipheralblood	blood

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