Variant report

Variant	rs36119
Chromosome Location	chr3:134697064-134697065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs36093	1.00[YRI][hapmap]
rs36107	1.00[YRI][hapmap]
rs36118	1.00[YRI][hapmap]
rs36122	1.00[YRI][hapmap]
rs40349	1.00[YRI][hapmap]
rs40619	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:134677400-134697400	Weak transcription	GM12878-XiMat	blood
3	chr3:134678600-134699400	Weak transcription	Aorta	Aorta
4	chr3:134690600-134702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:134690800-134701200	Weak transcription	Fetal Brain Female	brain
6	chr3:134693200-134697400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:134693200-134701200	Weak transcription	Fetal Brain Male	brain
8	chr3:134693800-134707400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:134694000-134707000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:134694200-134698000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:134694200-134709800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:134696200-134697600	Enhancers	Brain Anterior Caudate	brain
13	chr3:134697000-134697600	Enhancers	Psoas Muscle	Psoas
14	chr3:134697000-134697800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:134697000-134698000	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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