Variant report

Variant	rs36122190
Chromosome Location	chr15:40771818-40771819
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10851396	0.82[AMR][1000 genomes]
rs11070279	0.80[AMR][1000 genomes]
rs11070280	0.80[AMR][1000 genomes]
rs11852527	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11857247	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12915563	0.86[AMR][1000 genomes]
rs12916323	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1453183	0.82[AMR][1000 genomes]
rs1901774	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2123534	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2412524	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3213999	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34750756	0.86[AMR][1000 genomes]
rs35030447	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3743146	0.82[AMR][1000 genomes]
rs3803353	0.82[AMR][1000 genomes]
rs61048252	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62018030	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62018046	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62018048	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62018051	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7162749	0.81[AMR][1000 genomes]
rs7164385	0.87[EUR][1000 genomes]
rs7181909	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72733469	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs731640	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs733299	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8028910	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9672313	0.83[AMR][1000 genomes]
rs999197	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs36122190	CCDC32	Cis_1M	lymphoblastoid	RTeQTL
rs36122190	RP11-111A22.1	cis	lung	GTEx
rs36122190	ZFYVE19	Cis_1M	lymphoblastoid	RTeQTL
rs36122190	RP11-111A22.1	cis	Adipose Subcutaneous	GTEx
rs36122190	C15orf57	cis	Artery Tibial	GTEx
rs36122190	C15orf57	cis	Adipose Subcutaneous	GTEx
rs36122190	RP11-111A22.1	cis	Esophagus Muscularis	GTEx
rs36122190	RP11-111A22.1	cis	Artery Tibial	GTEx
rs36122190	C15orf57	cis	lung	GTEx
rs36122190	KNSTRN	cis	Heart Left Ventricle	GTEx
rs36122190	C15orf57	cis	Nerve Tibial	GTEx
rs36122190	CCDC32	cis	multi-tissue	Pritchard
rs36122190	C15orf57	cis	Esophagus Muscularis	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40765000-40772400	Weak transcription	Esophagus	oesophagus
2	chr15:40765000-40773400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr15:40770800-40774400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:40771400-40774800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links