Variant report

Variant	rs36126385
Chromosome Location	chr12:63187457-63187458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:62967790..62972054-chr12:63185896..63188649,3	MCF-7	breast:
2	chr12:62993432..63001334-chr12:63185505..63196473,30	MCF-7	breast:
3	chr12:62831609..62832559-chr12:63187320..63188381,5	K562	blood:
4	chr12:62992552..62995339-chr12:63185731..63187957,2	MCF-7	breast:
5	chr12:63107577..63110076-chr12:63187039..63189905,2	MCF-7	breast:
6	chr12:62974177..62977292-chr12:63185935..63188688,3	MCF-7	breast:
7	chr12:62974989..62976277-chr12:63187424..63188756,15	MCF-7	breast:
8	chr12:62996606..62997567-chr12:63187440..63188414,3	MCF-7	breast:
9	chr12:62995553..62999958-chr12:63184749..63190188,10	MCF-7	breast:
10	chr12:62996676..62998066-chr12:63187354..63188355,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12811245	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12818573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34179782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35214873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63175200-63193600	Weak transcription	Gastric	stomach
2	chr12:63175200-63206800	Weak transcription	Pancreas	Pancrea
3	chr12:63178400-63192400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:63180400-63187600	Weak transcription	Fetal Thymus	thymus
5	chr12:63180400-63192200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:63180400-63199000	Weak transcription	Aorta	Aorta
7	chr12:63180600-63188400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:63181200-63187600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:63181200-63197800	Weak transcription	Spleen	Spleen
10	chr12:63181200-63198200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:63181200-63200400	Weak transcription	Lung	lung
12	chr12:63181600-63191000	Weak transcription	Fetal Intestine Large	intestine
13	chr12:63181600-63194600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr12:63181800-63187600	Weak transcription	Placenta	Placenta
15	chr12:63182000-63193800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr12:63182400-63192600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:63182600-63195200	Weak transcription	Fetal Stomach	stomach
18	chr12:63183000-63190000	Weak transcription	Fetal Intestine Small	intestine
19	chr12:63184000-63187600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:63184000-63194600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:63184200-63187600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr12:63184200-63187600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:63184200-63187600	Weak transcription	Adipose Nuclei	Adipose
24	chr12:63184200-63187600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr12:63184400-63187600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr12:63184800-63190000	Weak transcription	HepG2	liver
27	chr12:63185000-63187600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:63185400-63188200	Enhancers	Fetal Brain Male	brain
29	chr12:63185600-63187800	Enhancers	Osteobl	bone
30	chr12:63185600-63188800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:63185800-63187800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:63185800-63187800	Enhancers	NH-A	brain
33	chr12:63185800-63188400	Enhancers	NHDF-Ad	bronchial
34	chr12:63186000-63188400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr12:63186000-63189000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:63186200-63187800	Enhancers	HSMM	muscle
37	chr12:63186200-63188400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr12:63186200-63188600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr12:63186200-63188600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr12:63186400-63187600	Weak transcription	Fetal Kidney	kidney
41	chr12:63186400-63187600	Weak transcription	NHLF	lung
42	chr12:63186400-63189000	Enhancers	A549	lung
43	chr12:63186400-63195200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr12:63186400-63198000	Weak transcription	Ovary	ovary
45	chr12:63186600-63187600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr12:63186600-63188600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:63186800-63187800	Enhancers	Brain Angular Gyrus	brain
48	chr12:63186800-63187800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr12:63186800-63188400	Enhancers	Brain Hippocampus Middle	brain
50	chr12:63186800-63188600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links