Variant report

Variant	rs36128526
Chromosome Location	chr12:76905406-76905407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11628635	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12880643	0.81[AMR][1000 genomes]
rs12885635	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12889361	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12893073	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12895811	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12896275	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34235165	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34622543	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34876486	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56258515	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7146092	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520195	chr12:76680360-76909947	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2761751	chr12:76882528-77029086	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76865200-76912000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr12:76865400-76909200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:76871000-76945400	Weak transcription	Gastric	stomach
4	chr12:76875200-76922400	Weak transcription	K562	blood
5	chr12:76876800-76912200	Weak transcription	Spleen	Spleen
6	chr12:76880000-76905800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:76882400-76912000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:76884800-76909000	Weak transcription	HSMM	muscle
9	chr12:76884800-76909200	Weak transcription	Pancreas	Pancrea
10	chr12:76884800-76914000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:76884800-76923200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:76885000-76917400	Weak transcription	Fetal Thymus	thymus
13	chr12:76885000-76941400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:76886600-76909200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:76888600-76918400	Weak transcription	Fetal Lung	lung
16	chr12:76889600-76912000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr12:76890000-76917200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:76890400-76916800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:76890400-76938000	Weak transcription	NHEK	skin
20	chr12:76890800-76912000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr12:76894200-76905600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr12:76895200-76927400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:76895600-76912000	Weak transcription	Lung	lung
24	chr12:76895600-76912400	Weak transcription	Fetal Stomach	stomach
25	chr12:76895600-76923000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr12:76896000-76952400	Weak transcription	Esophagus	oesophagus
27	chr12:76896200-76909200	Weak transcription	Aorta	Aorta
28	chr12:76896200-76913400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr12:76897400-76911800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr12:76898000-76909000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:76898200-76909000	Weak transcription	Thymus	Thymus
32	chr12:76898400-76906600	Weak transcription	Primary T cells from cord blood	blood
33	chr12:76898800-76917200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr12:76899200-76912600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:76899200-76917200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr12:76901000-76909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:76901000-76917200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:76901400-76911400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:76902600-76908400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr12:76902600-76917400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr12:76903600-76911800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr12:76904000-76912800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr12:76905200-76907800	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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