Variant report
| Variant | rs36128858 |
|---|---|
| Chromosome Location | chr15:54838089-54838090 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10518543 | 0.82[ASN][1000 genomes] |
| rs12648004 | 0.96[ASN][1000 genomes] |
| rs13106626 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13124870 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13127992 | 0.96[ASN][1000 genomes] |
| rs13136209 | 0.93[ASN][1000 genomes] |
| rs13138537 | 0.93[ASN][1000 genomes] |
| rs13139306 | 0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17014149 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17014190 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17184802 | 0.96[ASN][1000 genomes] |
| rs2068135 | 0.90[ASN][1000 genomes] |
| rs2068136 | 0.93[ASN][1000 genomes] |
| rs28643269 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs33999735 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34302928 | 0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35053690 | 0.96[ASN][1000 genomes] |
| rs35128288 | 0.93[ASN][1000 genomes] |
| rs35149191 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35199409 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35388412 | 0.96[ASN][1000 genomes] |
| rs35412182 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs36000518 | 0.93[ASN][1000 genomes] |
| rs36101862 | 0.93[ASN][1000 genomes] |
| rs71612199 | 0.93[ASN][1000 genomes] |
| rs71613905 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71613907 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71613908 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038660 | chr15:54756184-55039913 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv904236 | chr15:54820897-54912439 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54811000-54869600 | Weak transcription | Aorta | Aorta |
