Variant report

Variant	rs36150260
Chromosome Location	chr3:132291478-132291479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11128947	0.84[ASN][1000 genomes]
rs11713618	0.88[ASN][1000 genomes]
rs12635277	0.87[ASN][1000 genomes]
rs1395987	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1395988	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35601423	0.87[ASN][1000 genomes]
rs4241501	0.88[ASN][1000 genomes]
rs4282077	0.88[ASN][1000 genomes]
rs4857929	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4857931	0.84[ASN][1000 genomes]
rs4858172	0.89[ASN][1000 genomes]
rs4858173	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55752419	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58086354	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60827038	0.83[ASN][1000 genomes]
rs73818860	0.80[ASN][1000 genomes]
rs73818861	0.80[ASN][1000 genomes]
rs73818872	0.86[ASN][1000 genomes]
rs73818873	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73818879	0.85[ASN][1000 genomes]
rs73818883	0.82[ASN][1000 genomes]
rs954797	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011216	chr3:131876085-132630861	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3339972	chr3:131943549-132556158	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1000962	chr3:132115062-132919907	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132258600-132302600	Weak transcription	Fetal Kidney	kidney
2	chr3:132260400-132294000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:132260400-132294200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:132260600-132298800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:132261000-132294000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:132261800-132291600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:132262400-132298200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:132268400-132325400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:132269400-132294200	Weak transcription	HepG2	liver
10	chr3:132269600-132293600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:132269600-132294200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:132269600-132296000	Weak transcription	HMEC	breast
13	chr3:132269800-132291600	Weak transcription	NHEK	skin
14	chr3:132269800-132292800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:132270000-132291800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:132270000-132295400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr3:132270000-132296200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:132270200-132294200	Weak transcription	Fetal Thymus	thymus
19	chr3:132270600-132296000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:132270800-132294200	Weak transcription	Dnd41	blood
21	chr3:132272800-132310400	Weak transcription	Esophagus	oesophagus
22	chr3:132273000-132298400	Weak transcription	NH-A	brain
23	chr3:132274200-132291600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:132274200-132291600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:132274200-132293000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:132274400-132294200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:132274400-132296200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:132274400-132327800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:132274800-132345800	Weak transcription	Brain Germinal Matrix	brain
30	chr3:132275000-132296400	Weak transcription	Gastric	stomach
31	chr3:132275000-132297800	Weak transcription	Right Ventricle	heart
32	chr3:132275000-132317400	Weak transcription	Spleen	Spleen
33	chr3:132275800-132291600	Weak transcription	Pancreas	Pancrea
34	chr3:132275800-132294200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:132275800-132296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:132276000-132296000	Weak transcription	Fetal Heart	heart
37	chr3:132276000-132296400	Weak transcription	Hela-S3	cervix
38	chr3:132276600-132293000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:132277000-132291600	Weak transcription	Primary B cells from cord blood	blood
40	chr3:132277200-132293600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr3:132278000-132291600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr3:132278000-132317400	Weak transcription	Thymus	Thymus
43	chr3:132278400-132312200	Weak transcription	HSMM	muscle
44	chr3:132278800-132292800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:132280000-132293000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:132280000-132293000	Weak transcription	Ovary	ovary
47	chr3:132280000-132294200	Weak transcription	Brain Angular Gyrus	brain
48	chr3:132280000-132294200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr3:132280000-132315800	Weak transcription	Fetal Stomach	stomach
50	chr3:132280200-132291600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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