Variant report

Variant	rs361566
Chromosome Location	chr22:20785639-20785640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:62)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:62 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr22:20785259-20785754	K562	blood:	n/a	n/a
2	TEAD4	chr22:20785240-20785878	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr22:20785236-20786152	HUVEC	blood vessel:	n/a	n/a
4	MAX	chr22:20783089-20786463	K562	blood:	n/a	chr22:20786173-20786183 chr22:20784929-20784939
5	CTCF	chr22:20785190-20785681	MCF-7	breast:	n/a	n/a
6	GABPA	chr22:20785242-20785654	H1-hESC	embryonic stem cell:	n/a	n/a
7	MYC	chr22:20785254-20785784	MCF-7	breast:	n/a	n/a
8	NFIC	chr22:20784834-20786036	ECC-1	luminal epithelium:	n/a	n/a
9	CTCF	chr22:20785380-20785650	GM12868	blood:	n/a	n/a
10	HDAC2	chr22:20785241-20785833	K562	blood:	n/a	n/a
11	E2F6	chr22:20784640-20785839	A549	lung:	n/a	chr22:20785445-20785453
12	USF1	chr22:20785181-20785892	ECC-1	luminal epithelium:	n/a	n/a
13	BHLHE40	chr22:20785269-20785867	GM12878	blood:	n/a	n/a
14	MYC	chr22:20785337-20785763	MCF-7	breast:	n/a	n/a
15	MAX	chr22:20784919-20785967	HCT-116	colon:	n/a	chr22:20784929-20784939
16	TEAD4	chr22:20785098-20785962	ECC-1	luminal epithelium:	n/a	n/a
17	MAX	chr22:20784773-20785907	ECC-1	luminal epithelium:	n/a	chr22:20784929-20784939
18	CHD2	chr22:20784894-20785642	H1-hESC	embryonic stem cell:	n/a	n/a
19	CBX3	chr22:20785629-20786408	K562	blood:	n/a	n/a
20	HA-E2F1	chr22:20785119-20785811	MCF-7	breast:	n/a	n/a
21	MAX	chr22:20784970-20785924	HCT-116	colon:	n/a	n/a
22	E2F6	chr22:20784683-20786464	H1-hESC	embryonic stem cell:	n/a	chr22:20785445-20785453 chr22:20786172-20786181
23	MAX	chr22:20784660-20786580	H1-hESC	embryonic stem cell:	n/a	chr22:20786173-20786183 chr22:20784929-20784939
24	USF1	chr22:20785287-20785798	H1-hESC	embryonic stem cell:	n/a	n/a
25	EP300	chr22:20785079-20785927	ECC-1	luminal epithelium:	n/a	n/a
26	MXI1	chr22:20784945-20785789	H1-hESC	embryonic stem cell:	n/a	n/a
27	MYC	chr22:20784995-20785794	MCF-7	breast:	n/a	n/a
28	MAX	chr22:20784769-20786345	ECC-1	luminal epithelium:	n/a	chr22:20786173-20786183 chr22:20784929-20784939
29	E2F6	chr22:20784531-20786498	H1-hESC	embryonic stem cell:	n/a	chr22:20785445-20785453 chr22:20786172-20786181
30	SETDB1	chr22:20784630-20785654	K562	blood:	n/a	n/a
31	CTCF	chr22:20785160-20785719	A549	lung:	n/a	n/a
32	CCNT2	chr22:20785351-20785672	K562	blood:	n/a	n/a
33	TCF12	chr22:20784885-20786005	ECC-1	luminal epithelium:	n/a	n/a
34	MAX	chr22:20785234-20785736	A549	lung:	n/a	n/a
35	TEAD4	chr22:20785131-20785848	ECC-1	luminal epithelium:	n/a	n/a
36	CTCF	chr22:20785149-20785892	K562	blood:	n/a	n/a
37	MAX	chr22:20785038-20785906	MCF-7	breast:	n/a	n/a
38	MAX	chr22:20784799-20785966	MCF-7	breast:	n/a	chr22:20784929-20784939
39	THAP1	chr22:20785579-20786159	K562	blood:	n/a	n/a
40	ZBTB33	chr22:20785059-20785698	K562	blood:	n/a	n/a
41	POLR2A	chr22:20785191-20785675	MCF-7	breast:	n/a	n/a
42	NFIC	chr22:20784867-20785963	ECC-1	luminal epithelium:	n/a	n/a
43	BHLHE40	chr22:20785303-20785825	A549	lung:	n/a	n/a
44	USF1	chr22:20785211-20785870	ECC-1	luminal epithelium:	n/a	n/a
45	POLR2A	chr22:20785234-20785880	H1-neurons	neurons:	n/a	n/a
46	MAX	chr22:20784552-20785936	A549	lung:	n/a	chr22:20784929-20784939
47	POLR2A	chr22:20784674-20785912	H1-neurons	neurons:	n/a	n/a
48	SUZ12	chr22:20784818-20785760	H1-hESC	embryonic stem cell:	n/a	n/a
49	HMGN3	chr22:20783214-20785651	K562	blood:	n/a	n/a
50	USF2	chr22:20785071-20785674	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:20784991..20785913-chr22:20810469..20811173,5	MCF-7	breast:
2	chr22:20745421..20750259-chr22:20781607..20786254,5	K562	blood:
3	chr22:20784513..20786753-chr22:20791134..20793355,2	MCF-7	breast:
4	chr22:20747868..20750073-chr22:20782291..20786147,3	K562	blood:
5	chr22:20783526..20786836-chr22:20848696..20851807,5	MCF-7	breast:
6	chr22:20784366..20786092-chr22:20843080..20844600,2	K562	blood:
7	chr22:20784374..20787120-chr22:20877059..20879409,2	K562	blood:

No data

Variant related genes	Relation type
SCARF2	TF binding region
ENSG00000099917	Chromatin interaction
ENSG00000185252	Chromatin interaction
ENSG00000236003	Chromatin interaction
ENSG00000099910	Chromatin interaction
ENSG00000244486	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1638043	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2108746	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs362023	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs362031	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5752660	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5763025	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs738084	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs738086	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs738087	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs738088	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9610955	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:61 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518950	chr22:20306993-20965555	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
2	nsv432174	chr22:20309346-21102446	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
3	nsv1059066	chr22:20330744-20845128	Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv1056614	chr22:20470598-21462724	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv828954	chr22:20641693-20904711	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv491637	chr22:20659547-21440514	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
7	nsv916634	chr22:20659547-21464119	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
8	nsv533942	chr22:20659547-21505417	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
9	nsv529472	chr22:20659547-21561514	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
10	nsv914390	chr22:20697466-21460008	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
11	nsv588291	chr22:20698139-21461274	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
12	nsv917647	chr22:20708889-21440515	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
13	nsv531742	chr22:20708890-21407690	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
14	nsv533852	chr22:20708890-21561514	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
15	nsv1061867	chr22:20716924-21462446	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
16	nsv1058870	chr22:20716924-21567219	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
17	nsv918225	chr22:20716924-21611338	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
18	nsv914391	chr22:20718116-20793914	Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	nsv914392	chr22:20718116-20817808	Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
20	nsv914393	chr22:20718116-21034788	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
21	nsv531744	chr22:20718170-21427936	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
22	nsv834135	chr22:20724378-20845563	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv915954	chr22:20732437-21505417	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
24	nsv588293	chr22:20732809-21004476	Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
25	nsv948669	chr22:20732809-21461607	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
26	nsv531746	chr22:20733427-21505417	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
27	nsv588294	chr22:20733495-21365384	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
28	nsv588295	chr22:20733495-21462353	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
29	nsv588296	chr22:20733495-21465780	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
30	nsv1061472	chr22:20734244-20858186	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
31	nsv1056065	chr22:20734244-21460658	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
32	nsv544586	chr22:20734244-21460658	Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
33	nsv834136	chr22:20738730-20891767	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
34	nsv1067074	chr22:20739124-21440654	Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
35	nsv544587	chr22:20739124-21440654	Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
36	nsv1066482	chr22:20739125-21440655	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
37	nsv544588	chr22:20739125-21440655	Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
38	nsv1065725	chr22:20739324-20927615	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
39	nsv544589	chr22:20739324-20927615	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
40	nsv1063333	chr22:20739324-21353297	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
41	nsv544590	chr22:20739324-21353297	Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
42	nsv1059978	chr22:20739324-21440515	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
43	nsv544591	chr22:20739324-21440515	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
44	nsv914394	chr22:20741890-20789074	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
45	nsv949306	chr22:20742450-21461607	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
46	nsv523162	chr22:20743536-21462353	Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
47	nsv914396	chr22:20745201-20789074	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
48	nsv914397	chr22:20745201-20806361	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
49	nsv1056565	chr22:20745762-21460658	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
50	nsv914398	chr22:20747763-20793914	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:20778600-20786200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr22:20778600-20789400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:20779600-20789200	Weak transcription	NHDF-Ad	bronchial
4	chr22:20782000-20786600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:20783000-20786200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr22:20783200-20786000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr22:20783200-20786200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr22:20783200-20786200	Enhancers	Fetal Heart	heart
9	chr22:20783200-20786600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr22:20783400-20787200	Weak transcription	HepG2	liver
11	chr22:20783400-20790000	Weak transcription	HSMMtube	muscle
12	chr22:20783600-20786800	Enhancers	Lung	lung
13	chr22:20783600-20789800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr22:20783800-20785800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr22:20783800-20785800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
16	chr22:20783800-20786200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr22:20784000-20786000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
18	chr22:20784000-20786000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr22:20784000-20786000	Bivalent Enhancer	Fetal Thymus	thymus
20	chr22:20784200-20786400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr22:20784200-20786400	Bivalent Enhancer	Placenta	Placenta
22	chr22:20784200-20786800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr22:20784200-20796200	Weak transcription	Dnd41	blood
24	chr22:20784400-20785800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr22:20784400-20785800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
26	chr22:20784600-20785800	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
27	chr22:20784600-20785800	Flanking Active TSS	Pancreas	Pancrea
28	chr22:20784600-20785800	Bivalent Enhancer	GM12878-XiMat	blood
29	chr22:20784600-20786000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr22:20784600-20786000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
31	chr22:20784600-20786200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr22:20784600-20786200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr22:20784600-20786800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr22:20784800-20785800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
35	chr22:20784800-20785800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr22:20784800-20785800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr22:20784800-20785800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
38	chr22:20784800-20785800	Active TSS	Colon Smooth Muscle	Colon
39	chr22:20784800-20785800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
40	chr22:20784800-20785800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
41	chr22:20784800-20785800	Transcr. at gene 5' and 3'	Right Ventricle	heart
42	chr22:20784800-20786000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
43	chr22:20784800-20786000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
44	chr22:20784800-20786000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr22:20784800-20786000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr22:20784800-20786200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
47	chr22:20785000-20785800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr22:20785000-20785800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr22:20785000-20785800	Genic enhancers	Right Atrium	heart
50	chr22:20785000-20785800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links