Variant report

Variant	rs36159621
Chromosome Location	chr18:20909856-20909857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:20713856..20716342-chr18:20909811..20912824,4	MCF-7	breast:
2	chr18:20836340..20841828-chr18:20909850..20912920,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266495	Chromatin interaction
ENSG00000134508	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1113120	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12552503	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13283035	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1332347	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17486588	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064528	chr18:20757063-20968157	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv543665	chr18:20757063-20968157	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2758473	chr18:20770432-20927614	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2758716	chr18:20770432-20927614	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv32657	chr18:20783932-20933867	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv34149	chr18:20858139-21221891	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv431973	chr18:20861916-21118980	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv431974	chr18:20861916-21119291	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv909456	chr18:20895049-20946796	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv909457	chr18:20900003-20946796	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1060220	chr18:20904406-20949770	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:20883200-20914400	Weak transcription	Fetal Intestine Large	intestine
2	chr18:20888000-20916200	Weak transcription	Fetal Muscle Leg	muscle
3	chr18:20888400-20930400	Weak transcription	Primary T cells from cord blood	blood
4	chr18:20888600-20918600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr18:20889600-20910000	Weak transcription	Fetal Intestine Small	intestine
6	chr18:20892400-20915400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr18:20892800-20910400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr18:20893800-20923400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:20893800-20935800	Weak transcription	Spleen	Spleen
10	chr18:20894200-20910400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr18:20894200-20910400	Weak transcription	Fetal Stomach	stomach
12	chr18:20894400-20910400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:20898200-20920400	Weak transcription	NHLF	lung
14	chr18:20898600-20921400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr18:20899600-20938000	Weak transcription	Dnd41	blood
16	chr18:20901200-20910200	Weak transcription	Primary B cells from cord blood	blood
17	chr18:20901200-20910400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr18:20901400-20930000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr18:20902400-20910400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr18:20902600-20920400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr18:20904400-20914600	Weak transcription	Adipose Nuclei	Adipose
22	chr18:20904800-20910400	Weak transcription	Placenta	Placenta
23	chr18:20904800-20910600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr18:20904800-20910600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr18:20904800-20911000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr18:20904800-20913600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr18:20904800-20915200	Weak transcription	Fetal Lung	lung
28	chr18:20905000-20936400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr18:20905400-20913400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr18:20905800-20910600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr18:20906000-20918200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr18:20906000-20918200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr18:20906200-20911000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr18:20907800-20930600	Weak transcription	HSMM	muscle
35	chr18:20908600-20910400	Weak transcription	Right Ventricle	heart
36	chr18:20909200-20910400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr18:20909200-20936200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr18:20909400-20921200	Weak transcription	Brain Germinal Matrix	brain
39	chr18:20909400-20931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr18:20909600-20915000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr18:20909800-20910200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr18:20909800-20910200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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