Variant report

Variant	rs36162266
Chromosome Location	chr14:72716787-72716788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12147219	0.83[EUR][1000 genomes]
rs12147220	0.83[EUR][1000 genomes]
rs12147238	0.83[EUR][1000 genomes]
rs12147792	0.83[EUR][1000 genomes]
rs12147803	0.83[EUR][1000 genomes]
rs12881198	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12891167	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897241	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1520327	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17109194	0.81[EUR][1000 genomes]
rs17109324	0.83[EUR][1000 genomes]
rs17109573	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17109589	0.90[ASN][1000 genomes]
rs2238219	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2238220	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2238223	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2238224	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2238228	0.83[EUR][1000 genomes]
rs2238229	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2238230	0.83[EUR][1000 genomes]
rs2238231	0.83[EUR][1000 genomes]
rs2238232	0.83[EUR][1000 genomes]
rs2238233	0.83[EUR][1000 genomes]
rs2238234	0.83[EUR][1000 genomes]
rs2238235	0.83[EUR][1000 genomes]
rs2238236	0.83[EUR][1000 genomes]
rs2238237	0.83[EUR][1000 genomes]
rs2239260	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2239262	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2283399	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2283400	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34122902	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34905590	0.83[EUR][1000 genomes]
rs35413081	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903000	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903005	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56263585	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66823874	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs699359	0.87[AFR][1000 genomes]
rs7146590	0.80[AFR][1000 genomes]
rs7156404	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs722561	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72721816	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs847246	0.92[ASN][1000 genomes]
rs847247	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs847248	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs847249	0.80[ASN][1000 genomes]
rs847251	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs847256	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs847257	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs847260	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs847261	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72699800-72719600	Weak transcription	Right Ventricle	heart
2	chr14:72706600-72721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:72711600-72719600	Weak transcription	Left Ventricle	heart
4	chr14:72712000-72722200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72712800-72722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:72715800-72717200	Weak transcription	Fetal Heart	heart
7	chr14:72716000-72717200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:72716200-72717400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:72716200-72717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:72716400-72717400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:72716400-72717600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:72716600-72717000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:72716600-72717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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