Variant report

Variant	rs36169068
Chromosome Location	chrX:76267394-76267395
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1038096	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132562	1.00[ASN][1000 genomes]
rs12503604	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651428	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111000	1.00[ASN][1000 genomes]
rs1600203	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897751	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897753	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2889608	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34414248	0.81[AMR][1000 genomes]
rs35214029	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35662972	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444883	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485844	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485845	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583808	1.00[ASN][1000 genomes]
rs6819466	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6830571	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855519	0.83[AMR][1000 genomes]
rs7699558	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699944	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700176	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685923	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685947	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685950	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830377	chrX:75525310-76337197	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv498037	chrX:75586665-76291236	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv3422093	chrX:76231286-76268284	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3434014	chrX:76231311-76402097	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76265800-76267400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chrX:76265800-76267600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chrX:76266000-76267400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:76266200-76267400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chrX:76266200-76267400	Active TSS	H9 Cell Line	embryonic stem cell
6	chrX:76266200-76267400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chrX:76266200-76267400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chrX:76266200-76267600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:76266400-76267400	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chrX:76266400-76267600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chrX:76267000-76267400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chrX:76267200-76267400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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