Variant report

Variant	rs36174144
Chromosome Location	chr12:58469303-58469304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1027800	0.81[ASN][1000 genomes]
rs10783866	0.81[ASN][1000 genomes]
rs10783867	0.81[ASN][1000 genomes]
rs10783868	0.81[ASN][1000 genomes]
rs10877056	0.82[ASN][1000 genomes]
rs10877065	0.86[ASN][1000 genomes]
rs10877066	0.87[ASN][1000 genomes]
rs10877067	0.87[ASN][1000 genomes]
rs11172425	0.82[ASN][1000 genomes]
rs11172427	0.82[ASN][1000 genomes]
rs11172446	0.81[ASN][1000 genomes]
rs11172456	0.88[ASN][1000 genomes]
rs11615944	0.87[ASN][1000 genomes]
rs11834786	0.81[ASN][1000 genomes]
rs12580381	0.82[ASN][1000 genomes]
rs12824706	0.86[ASN][1000 genomes]
rs1354794	0.81[ASN][1000 genomes]
rs1354795	0.82[ASN][1000 genomes]
rs1395511	0.81[ASN][1000 genomes]
rs1395514	0.82[ASN][1000 genomes]
rs1506883	0.81[ASN][1000 genomes]
rs1506885	0.81[ASN][1000 genomes]
rs1506890	0.82[ASN][1000 genomes]
rs1567130	0.81[ASN][1000 genomes]
rs1580976	0.85[ASN][1000 genomes]
rs1580977	0.87[ASN][1000 genomes]
rs1605329	0.81[ASN][1000 genomes]
rs1605330	0.81[ASN][1000 genomes]
rs1605331	0.81[ASN][1000 genomes]
rs1605334	0.82[ASN][1000 genomes]
rs1605335	0.82[ASN][1000 genomes]
rs1857941	0.81[ASN][1000 genomes]
rs1911260	0.82[ASN][1000 genomes]
rs1911261	0.82[ASN][1000 genomes]
rs1911262	0.82[ASN][1000 genomes]
rs2002580	0.86[ASN][1000 genomes]
rs2372376	0.82[ASN][1000 genomes]
rs2659639	0.82[ASN][1000 genomes]
rs2659646	0.87[ASN][1000 genomes]
rs2659665	0.82[ASN][1000 genomes]
rs2720173	0.88[ASN][1000 genomes]
rs2720176	0.88[ASN][1000 genomes]
rs2720179	0.87[ASN][1000 genomes]
rs34885501	0.86[ASN][1000 genomes]
rs35599363	0.82[ASN][1000 genomes]
rs4403837	0.82[ASN][1000 genomes]
rs4435045	0.82[ASN][1000 genomes]
rs4444117	0.82[ASN][1000 genomes]
rs4465402	0.82[ASN][1000 genomes]
rs4489786	0.81[ASN][1000 genomes]
rs4575322	0.82[ASN][1000 genomes]
rs4760186	0.81[ASN][1000 genomes]
rs4760187	0.81[ASN][1000 genomes]
rs4760188	0.86[ASN][1000 genomes]
rs4760364	0.86[ASN][1000 genomes]
rs4760365	0.86[ASN][1000 genomes]
rs4760366	0.87[ASN][1000 genomes]
rs6581173	0.81[ASN][1000 genomes]
rs7136458	0.81[ASN][1000 genomes]
rs7139165	0.82[ASN][1000 genomes]
rs7308860	0.81[ASN][1000 genomes]
rs7309322	0.81[ASN][1000 genomes]
rs7954592	0.81[ASN][1000 genomes]
rs7959717	0.87[ASN][1000 genomes]
rs7970516	0.82[ASN][1000 genomes]
rs7972562	0.82[ASN][1000 genomes]
rs7979813	0.82[ASN][1000 genomes]
rs7980024	0.82[ASN][1000 genomes]
rs7980627	0.81[ASN][1000 genomes]
rs970249	0.81[ASN][1000 genomes]
rs982492	0.87[ASN][1000 genomes]
rs982493	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
2	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3502230	chr12:58458209-58490226	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3502241	chr12:58458223-58490223	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58466200-58473600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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