Variant report

Variant	rs36175276
Chromosome Location	chr6:5688563-5688564
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10428160	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10589669	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11552978	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12107272	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12108018	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12108142	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13059624	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065136	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13068317	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13072410	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13074614	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13074787	0.82[AMR][1000 genomes]
rs13076960	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13079960	1.00[AMR][1000 genomes]
rs13080057	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13081992	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13083238	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13083613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13083934	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13084692	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13087627	0.86[EUR][1000 genomes]
rs13087631	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13088532	0.91[AMR][1000 genomes]
rs13091170	0.82[EUR][1000 genomes]
rs13091236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13093128	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13096085	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13097876	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13100915	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13100937	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34008360	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34269725	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34279227	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34284740	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34394867	1.00[AMR][1000 genomes]
rs34428696	0.81[EUR][1000 genomes]
rs34470469	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34479374	1.00[AMR][1000 genomes]
rs34489202	0.86[EUR][1000 genomes]
rs34688367	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34711372	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34725039	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34826460	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34848749	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34860591	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34951301	0.86[EUR][1000 genomes]
rs35006699	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35025156	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35076733	0.82[EUR][1000 genomes]
rs35098355	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35103318	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35219252	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35234681	1.00[AMR][1000 genomes]
rs35239055	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35312318	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35366262	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35422064	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35499232	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35514544	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35526367	1.00[AMR][1000 genomes]
rs35539438	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35592768	1.00[AMR][1000 genomes]
rs35764973	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35914268	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35947493	1.00[AMR][1000 genomes]
rs35947806	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36032715	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36098932	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36157152	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41267851	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55644421	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56083233	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56094988	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56246599	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56408882	1.00[AMR][1000 genomes]
rs6764579	1.00[AMR][1000 genomes]
rs6805362	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71311393	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71311394	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71311397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71311398	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71311402	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71313504	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71313508	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71313509	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71313510	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71313511	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7614053	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5678200-5694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:5678400-5693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:5680600-5695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:5680800-5695000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:5681800-5695000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:5682200-5693200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:5682400-5695200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:5682400-5695400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:5684600-5695400	Weak transcription	Fetal Stomach	stomach
14	chr6:5684800-5696000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:5684800-5706000	Weak transcription	Ovary	ovary
16	chr6:5685000-5695400	Weak transcription	HSMMtube	muscle
17	chr6:5685000-5698600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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