Variant report

Variant	rs36185416
Chromosome Location	chr9:137026174-137026175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136999039..137001797-chr9:137024529..137028610,4	MCF-7	breast:
2	chr9:137000597..137002215-chr9:137026002..137027594,2	K562	blood:
3	chr9:137016596..137020478-chr9:137022526..137026259,4	K562	blood:
4	chr9:137020148..137022864-chr9:137024940..137026943,3	MCF-7	breast:
5	chr9:137024298..137027032-chr9:137027722..137030112,3	K562	blood:
6	chr9:137013921..137016554-chr9:137022238..137026301,3	K562	blood:

Variant related genes	Relation type
ENSG00000273249	Chromatin interaction
ENSG00000196363	Chromatin interaction
ENSG00000221676	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1128044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11556390	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28410119	0.80[ASN][1000 genomes]
rs28412218	0.91[ASN][1000 genomes]
rs28415637	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28428662	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28438574	0.95[ASN][1000 genomes]
rs28473092	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28475221	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28485659	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28490920	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28498266	0.90[AFR][1000 genomes]
rs28508246	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28522840	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28549758	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28567437	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28588875	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28604373	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28610236	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28611335	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28635910	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28637447	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28647893	0.91[ASN][1000 genomes]
rs28648812	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28661406	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28681320	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28681533	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28695913	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28705801	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34417824	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35401074	0.82[ASN][1000 genomes]
rs35715743	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35949820	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55874211	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
6	esv1793302	chr9:136990615-137390602	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:137004600-137026200	Strong transcription	Fetal Intestine Large	intestine
2	chr9:137004600-137026200	Strong transcription	Hela-S3	cervix
3	chr9:137004600-137026400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:137004800-137026400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:137004800-137026400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:137005000-137026200	Strong transcription	Placenta	Placenta
7	chr9:137005000-137026400	Strong transcription	Brain Germinal Matrix	brain
8	chr9:137005800-137027000	Strong transcription	Fetal Stomach	stomach
9	chr9:137007400-137027600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:137009600-137027600	Weak transcription	Fetal Brain Male	brain
11	chr9:137010600-137027600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:137011000-137026200	Strong transcription	Fetal Muscle Leg	muscle
13	chr9:137012800-137026400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:137013000-137026400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:137013400-137028200	Weak transcription	Right Atrium	heart
16	chr9:137013600-137028200	Weak transcription	Stomach Mucosa	stomach
17	chr9:137014000-137026200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:137015800-137030200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:137016000-137026600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:137016400-137027800	Strong transcription	NHLF	lung
21	chr9:137016400-137029600	Weak transcription	K562	blood
22	chr9:137016600-137026400	Strong transcription	GM12878-XiMat	blood
23	chr9:137016800-137026400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:137017800-137026400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:137020400-137028600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr9:137021200-137027800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr9:137021800-137028000	Weak transcription	Psoas Muscle	Psoas
28	chr9:137021800-137028200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:137021800-137028400	Weak transcription	Fetal Kidney	kidney
30	chr9:137022000-137027800	Weak transcription	NHDF-Ad	bronchial
31	chr9:137022200-137028000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr9:137022400-137026400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:137022400-137027800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:137022400-137028400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:137022400-137028400	Weak transcription	Small Intestine	intestine
36	chr9:137023400-137028000	Weak transcription	Primary B cells from cord blood	blood
37	chr9:137023400-137028400	Weak transcription	HSMMtube	muscle
38	chr9:137023800-137027800	Weak transcription	HUVEC	blood vessel
39	chr9:137023800-137028000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr9:137023800-137028400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:137023800-137028600	Weak transcription	HSMM	muscle
42	chr9:137024000-137027400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr9:137024000-137027800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr9:137024000-137027800	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:137024000-137027800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr9:137024000-137028200	Weak transcription	HMEC	breast
47	chr9:137024000-137028200	Weak transcription	Osteobl	bone
48	chr9:137024000-137028400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:137024000-137028400	Weak transcription	NH-A	brain
50	chr9:137024000-137029000	Weak transcription	A549	lung

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