Variant report

Variant	rs36193012
Chromosome Location	chrX:62668977-62668978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10208675	0.82[ASN][1000 genomes]
rs11900596	0.82[ASN][1000 genomes]
rs13003895	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13398408	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs181723	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2054835	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2539979	0.89[ASN][1000 genomes]
rs2553042	0.89[ASN][1000 genomes]
rs2710635	0.84[ASN][1000 genomes]
rs2901518	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2931488	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2969300	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34503992	0.80[AMR][1000 genomes]
rs36009942	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs360786	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360787	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360788	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360789	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360790	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360793	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs360794	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360795	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360796	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360798	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs360802	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs360805	0.89[ASN][1000 genomes]
rs360806	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6758263	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6760804	0.82[ASN][1000 genomes]
rs67657712	0.87[ASN][1000 genomes]
rs7590973	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817395	chrX:62473681-63131313	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:62642000-62671800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chrX:62642400-62677000	Weak transcription	Left Ventricle	heart
3	chrX:62646800-62672400	Weak transcription	Gastric	stomach
4	chrX:62647600-62672000	Weak transcription	Duodenum Mucosa	Duodenum
5	chrX:62647600-62672000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chrX:62649200-62672400	Weak transcription	Ovary	ovary
7	chrX:62652600-62672400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chrX:62652600-62672400	Weak transcription	Fetal Intestine Large	intestine
9	chrX:62656800-62671800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chrX:62657000-62672000	Weak transcription	Pancreas	Pancrea
11	chrX:62657000-62672400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chrX:62657000-62673000	Weak transcription	Esophagus	oesophagus
13	chrX:62661000-62672200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chrX:62662000-62671600	Weak transcription	Aorta	Aorta

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