Variant report

Variant	rs36193666
Chromosome Location	chrY:7349224-7349225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10506484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10878437	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11176196	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11176204	0.91[ASN][1000 genomes]
rs11176205	0.89[ASN][1000 genomes]
rs11176206	0.91[ASN][1000 genomes]
rs11608268	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11613371	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12229196	0.91[ASN][1000 genomes]
rs12229755	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12423909	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12426780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12426787	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12426810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12581104	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12581129	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12581152	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12581225	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12582720	0.84[EUR][1000 genomes]
rs1289	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1290	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1389326	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1493485	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1565730	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17245879	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17245893	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17245914	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17245927	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17245958	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17826399	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17826610	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3751276	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3920021	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4628763	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4644699	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4913301	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4913306	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4913309	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4913434	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4913435	0.88[EUR][1000 genomes]
rs4913501	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4913503	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4913510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4913511	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55650393	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56219012	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57923140	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58459118	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58720434	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59747012	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60282479	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61690286	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66656315	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66718779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67093681	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67312362	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67385685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67590485	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7132569	0.91[ASN][1000 genomes]
rs7135845	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7135945	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72648170	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7304369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7307402	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7307540	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7311930	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7313348	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7316727	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7316747	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7961635	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7976314	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870093	chrY:7286569-7512591	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:7326800-7350200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chrY:7337000-7360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chrY:7337800-7370200	Weak transcription	HSMM	muscle

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