Variant report

Variant	rs36200798
Chromosome Location	chr2:227810619-227810620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10264847	0.90[ASN][1000 genomes]
rs10499488	0.91[ASN][1000 genomes]
rs11772495	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6461300	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753843	chr2:227705161-227855493	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:227757000-227820400	Weak transcription	Right Ventricle	heart
2	chr2:227789600-227811000	Weak transcription	Lung	lung
3	chr2:227789600-227812800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:227789600-227816000	Weak transcription	Fetal Stomach	stomach
5	chr2:227789600-227818000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:227789600-227819600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:227789600-227821000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:227789600-227838600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr2:227789600-227860200	Weak transcription	Pancreas	Pancrea
10	chr2:227789800-227817800	Weak transcription	Primary T cells from cord blood	blood
11	chr2:227789800-227818600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:227789800-227818800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:227789800-227819600	Weak transcription	Left Ventricle	heart
14	chr2:227789800-227828200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:227790000-227816800	Weak transcription	Thymus	Thymus
16	chr2:227790200-227822800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:227798600-227813200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:227805600-227819600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:227809200-227814200	Weak transcription	Fetal Thymus	thymus
20	chr2:227809200-227816600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr2:227810400-227810800	ZNF genes & repeats	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links