Variant report

Variant	rs36226548
Chromosome Location	chr3:121795640-121795641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:121795470-121795786	MCF10A-Er-Src	breast:	n/a	n/a
2	RUNX3	chr3:121795188-121797854	GM12878	blood:	n/a	n/a
3	SP1	chr3:121795343-121795983	HepG2	liver:	n/a	n/a
4	MTA3	chr3:121794950-121799623	GM12878	blood:	n/a	n/a
5	POLR2A	chr3:121795437-121797732	GM12891	blood:	n/a	n/a
6	HNF4G	chr3:121795346-121795949	HepG2	liver:	n/a	chr3:121795533-121795545 chr3:121795529-121795541 chr3:121795528-121795542 chr3:121795529-121795542 chr3:121795524-121795546 chr3:121795528-121795541 chr3:121795463-121795477 chr3:121795526-121795544 chr3:121795529-121795541 chr3:121795529-121795541
7	FOXA1	chr3:121795336-121795816	HepG2	liver:	n/a	n/a
8	EBF1	chr3:121795153-121797811	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:121795059-121798114	GM12878	blood:	n/a	n/a
10	RUNX3	chr3:121795586-121797349	GM12878	blood:	n/a	n/a
11	NFE2	chr3:121795640-121795651	GM12878	blood:	n/a	n/a
12	HNF4A	chr3:121795296-121795975	HepG2	liver:	n/a	chr3:121795533-121795545 chr3:121795529-121795541 chr3:121795759-121795774 chr3:121795528-121795542 chr3:121795529-121795542 chr3:121795524-121795546 chr3:121795528-121795541 chr3:121795463-121795477 chr3:121795526-121795544 chr3:121795529-121795541 chr3:121795529-121795541
13	POLR2A	chr3:121795126-121797684	GM15510	blood:	n/a	n/a
14	STAT3	chr3:121795508-121795717	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr3:121795557-121795775	MCF10A-Er-Src	breast:	n/a	n/a
16	FOSL2	chr3:121795501-121795907	HepG2	liver:	n/a	n/a
17	RELA	chr3:121795261-121797791	GM10847	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121795327-121795336 chr3:121796549-121796558 chr3:121796549-121796558 chr3:121795327-121795336
18	IRF3	chr3:121795573-121795652	GM12878	blood:	n/a	n/a
19	STAT5A	chr3:121795496-121797873	GM12878	blood:	n/a	chr3:121797144-121797152 chr3:121796184-121796193 chr3:121796183-121796192
20	POLR2A	chr3:121795126-121797918	GM12878	blood:	n/a	n/a
21	RXRA	chr3:121795309-121795692	HepG2	liver:	n/a	chr3:121795463-121795476 chr3:121795462-121795478 chr3:121795463-121795476 chr3:121795462-121795476 chr3:121795399-121795412 chr3:121795533-121795542 chr3:121795463-121795476 chr3:121795460-121795480
22	ZNF143	chr3:121795495-121796897	GM12878	blood:	n/a	n/a
23	FOS	chr3:121795285-121795792	MCF10A-Er-Src	breast:	n/a	chr3:121795411-121795422 chr3:121795409-121795420
24	EP300	chr3:121795389-121797818	GM12878	blood:	n/a	n/a
25	BHLHE40	chr3:121795116-121797860	GM12878	blood:	n/a	n/a
26	RELA	chr3:121795371-121797703	GM18951	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121796549-121796558 chr3:121796549-121796558
27	FOS	chr3:121795253-121795815	HUVEC	blood vessel:	n/a	chr3:121795411-121795422 chr3:121795409-121795420
28	POLR2A	chr3:121795619-121797507	GM12892	blood:	n/a	n/a
29	CHD1	chr3:121795241-121798185	GM12878	blood:	n/a	n/a
30	POLR2A	chr3:121795293-121797450	GM12878	blood:	n/a	n/a
31	STAT3	chr3:121795457-121795796	MCF10A-Er-Src	breast:	n/a	n/a
32	FOS	chr3:121795550-121795750	MCF10A-Er-Src	breast:	n/a	n/a
33	POLR2A	chr3:121792444-121801560	GM12878	blood:	n/a	n/a
34	FOS	chr3:121795478-121795798	MCF10A-Er-Src	breast:	n/a	n/a
35	FOXA1	chr3:121795325-121795929	HepG2	liver:	n/a	n/a
36	RELA	chr3:121795170-121798038	GM12878	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121795327-121795336 chr3:121796549-121796558 chr3:121796549-121796558 chr3:121795327-121795336
37	EP300	chr3:121795537-121795735	GM12878	blood:	n/a	n/a
38	FOXA1	chr3:121795345-121795955	HepG2	liver:	n/a	n/a
39	CHD2	chr3:121795285-121797779	GM12878	blood:	n/a	n/a
40	JUND	chr3:121795547-121795844	HepG2	liver:	n/a	chr3:121795677-121795688
41	HNF4A	chr3:121795342-121795910	HepG2	liver:	n/a	chr3:121795533-121795545 chr3:121795529-121795541 chr3:121795759-121795774 chr3:121795528-121795542 chr3:121795529-121795542 chr3:121795524-121795546 chr3:121795528-121795541 chr3:121795463-121795477 chr3:121795526-121795544 chr3:121795529-121795541 chr3:121795529-121795541
42	STAT3	chr3:121795486-121795774	MCF10A-Er-Src	breast:	n/a	n/a
43	PML	chr3:121795498-121797724	GM12878	blood:	n/a	n/a
44	POLR2A	chr3:121793374-121798119	GM18505	blood:	n/a	n/a
45	MXI1	chr3:121795125-121797626	GM12878	blood:	n/a	n/a
46	USF2	chr3:121795089-121795791	GM12878	blood:	n/a	n/a
47	ARID3A	chr3:121795516-121795935	HepG2	liver:	n/a	n/a
48	MAX	chr3:121795561-121797371	GM12878	blood:	n/a	chr3:121796345-121796355
49	EP300	chr3:121795563-121796938	GM12878	blood:	n/a	n/a
50	POLR2A	chr3:121795233-121797590	GM18951	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121771737..121774786-chr3:121794365..121797921,3	MCF-7	breast:

Variant related genes	Relation type
CD86	TF binding region
ENSG00000114013	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2293610	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121786600-121815800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:121792000-121798400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:121792800-121797600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr3:121792800-121798400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:121793000-121795800	Weak transcription	Esophagus	oesophagus
6	chr3:121793800-121795800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:121794400-121797400	Enhancers	Adipose Nuclei	Adipose
8	chr3:121794800-121796400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:121795200-121796000	Enhancers	HUVEC	blood vessel
10	chr3:121795200-121796200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:121795200-121796200	Enhancers	Liver	Liver
12	chr3:121795200-121796400	Flanking Active TSS	GM12878-XiMat	blood
13	chr3:121795200-121796600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:121795200-121797000	Enhancers	HepG2	liver
15	chr3:121795400-121796000	Enhancers	Fetal Intestine Small	intestine
16	chr3:121795400-121796000	Enhancers	HMEC	breast
17	chr3:121795400-121796200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:121795400-121796200	Enhancers	Fetal Intestine Large	intestine
19	chr3:121795400-121796400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:121795400-121796400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:121795400-121796600	Enhancers	Primary hematopoietic stem cells	blood
22	chr3:121795400-121797000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:121795600-121795800	Enhancers	Fetal Muscle Trunk	muscle
24	chr3:121795600-121796000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr3:121795600-121796200	Enhancers	Placenta	Placenta
26	chr3:121795600-121796800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr3:121795600-121796800	Enhancers	Spleen	Spleen
28	chr3:121795600-121798200	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr3:121795600-121798600	Flanking Active TSS	Primary B cells from peripheral blood	blood
30	chr3:121795600-121800200	Weak transcription	NHEK	skin

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