Variant report

Variant	rs36226879
Chromosome Location	chr2:87018923-87018924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr2:87018445-87019083	H1-hESC	embryonic stem cell:	n/a	n/a
2	NRF1	chr2:87018697-87019121	GM12878	blood:	n/a	n/a
3	E2F6	chr2:87018324-87019221	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr2:87018672-87019061	H1-hESC	embryonic stem cell:	n/a	n/a
5	GTF2F1	chr2:87018768-87019068	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr2:87017074-87019173	H1-hESC	embryonic stem cell:	n/a	chr2:87019052-87019065 chr2:87018853-87018864
7	CHD2	chr2:87018246-87019090	H1-hESC	embryonic stem cell:	n/a	n/a
8	SUZ12	chr2:87015893-87019035	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr2:87017499-87019101	H1-hESC	embryonic stem cell:	n/a	n/a
10	ELK1	chr2:87018811-87019191	GM12878	blood:	n/a	n/a
11	MAZ	chr2:87018837-87019103	Hela-S3	cervix:	n/a	n/a
12	CHD2	chr2:87018146-87018931	GM12878	blood:	n/a	n/a
13	JUND	chr2:87017924-87018942	H1-hESC	embryonic stem cell:	n/a	chr2:87018081-87018090 chr2:87018627-87018635
14	MAX	chr2:87018452-87019072	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CD8A	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10451632	1.00[AMR][1000 genomes]
rs41368845	1.00[AMR][1000 genomes]
rs60837756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv10063	chr2:86940988-87084360	Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002420	chr2:86948835-87172715	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv874472	chr2:86961252-87071474	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1008817	chr2:86970406-87172715	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv14382	chr2:86972214-87174121	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv997982	chr2:86972834-87105864	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1007746	chr2:86972834-87172715	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv458585	chr2:86974318-87108211	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv582373	chr2:86974318-87108211	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1007307	chr2:86974563-87055214	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv535809	chr2:86974563-87055214	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1003748	chr2:86975514-87032318	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv535810	chr2:86975514-87032318	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv1004572	chr2:86975514-87082883	Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv535811	chr2:86975514-87082883	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:87016000-87019000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
2	chr2:87016800-87019000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr2:87017200-87019000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:87017200-87019000	Bivalent Enhancer	Lung	lung
5	chr2:87017400-87019000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr2:87017400-87019000	Bivalent Enhancer	Placenta	Placenta
7	chr2:87017400-87019200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:87017600-87019000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:87017600-87019000	Flanking Active TSS	Spleen	Spleen
10	chr2:87017600-87019600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
11	chr2:87017600-87020400	Active TSS	Thymus	Thymus
12	chr2:87017800-87019000	Enhancers	Pancreas	Pancrea
13	chr2:87017800-87019000	Bivalent Enhancer	GM12878-XiMat	blood
14	chr2:87018000-87019000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
15	chr2:87018000-87019000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
16	chr2:87018000-87019000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
17	chr2:87018000-87019000	Enhancers	Right Ventricle	heart
18	chr2:87018000-87019200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:87018200-87019000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
20	chr2:87018200-87019000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:87018200-87019000	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr2:87018200-87019200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
23	chr2:87018400-87019000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:87018400-87019000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
25	chr2:87018400-87019000	Bivalent Enhancer	Brain Substantia Nigra	brain
26	chr2:87018400-87019000	Bivalent Enhancer	Fetal Intestine Small	intestine
27	chr2:87018400-87019000	Bivalent Enhancer	HMEC	breast
28	chr2:87018600-87019000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:87018600-87019000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:87018600-87019000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:87018600-87019000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:87018600-87019000	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
33	chr2:87018600-87019000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:87018600-87019000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr2:87018600-87019000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:87018600-87019000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:87018600-87019000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:87018600-87019000	Bivalent Enhancer	Adipose Nuclei	Adipose
39	chr2:87018600-87019000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
40	chr2:87018600-87019000	Bivalent Enhancer	Esophagus	oesophagus
41	chr2:87018600-87019000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr2:87018600-87019000	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr2:87018600-87019000	Bivalent Enhancer	Fetal Stomach	stomach
44	chr2:87018600-87019000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
45	chr2:87018600-87019000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
46	chr2:87018600-87019000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
47	chr2:87018600-87019400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
48	chr2:87018600-87019600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr2:87018800-87019000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
50	chr2:87018800-87019000	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived

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